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Protein Alignment scny and Usp5

DIOPT Version :9

Sequence 1:	NP_729092.1	Gene:	scny / 38648	FlyBaseID:	FBgn0260936	Length:	1038	Species:	Drosophila melanogaster
Sequence 2:	NP_001246589.1	Gene:	Usp5 / 38375	FlyBaseID:	FBgn0035402	Length:	827	Species:	Drosophila melanogaster

Alignment Length:	546	Identity:	108/546 - (19%)
Similarity:	192/546 - (35%)	Gaps:	153/546 - (28%)

- Green bases have known domain annotations that are detailed below.

  Fly   128 HINHHNHQHPTSNPNELPKPKRVLYPRE---NIRIG-W-----KQSERKWQVG---TGMINVGNT 180
            |:..| ..|...|...:.|.::.:...|   |.||| |     .:||.:...|   |||.|:||:
  Fly   277 HLERH-LSHFGINMAAMKKSEKSMVELELDINQRIGEWTALTESESELQPVAGPGYTGMRNLGNS 340

  Fly   181 CYLNSTLQALLHIPALANWLV------------SEQAHLADCNVAEPGSGC---IICAMTKTLLA 230
            ||:||.:|.|..||......|            |:.|:..:..:|:.|:|.   ...::.:..|.
  Fly   341 CYINSVMQVLFVIPDFQQRFVGTGAERYFKEFPSDPANDFNIQMAKLGTGLQSGKYSSIAENTLD 405

  Fly   231 TQSNQSAVRPFLIYSKLKQICKHMVVGR---------QEDAHEFLRFLVEAMERAYLMRFRNYKE 286
            | .:.:.:.|.:..:         :||:         |:||::|...|:..::|    ..||
  Fly   406 T-DHSTGISPAMFKN---------IVGKNHPDFSTKQQQDANDFYLHLLTLLDR----NSRN--- 453

  Fly   287 LDQLVKETTPLGQI-FGGYLRSEVRCLSCNHVSITFQHFQDLLLDI--RKADSLEDAFEGHFSRE 348
                  :|.|...: |  .|...|.||:.:.|....:......|.:  .||.:|::..|....::
  Fly   454 ------QTNPADALKF--LLEDRVECLASHKVKYNTREEYSFRLPVPLDKATNLDEVREFQERKK 510

  Fly   349 RLEDMGYK------------CEGCKK------------------KVSATKQFSLERAPITLCIQL 383
            ...:.|.:            .:.|.:                  |.:|.|...|...|..|.|.:
  Fly   511 AARETGQRLPDRDIVRHKVPLQACLERFFGPELIEQFYSTAIGSKTNARKITRLATMPDCLMIHV 575

  Fly   384 KRFSM----IGNKLTKQISFKSRIDLSKYAAR-----SQAAQAQPLTYR--------LVSMVTHL 431
            .:|::    :..||...:.....:|||.:.:.     .:.|..:|.|..        ::|.:..:
  Fly   576 GKFTLGDDWVPKKLDVSVDMPDELDLSNWRSAGGLQPGEEALPEPATEEVKFAFDEAVMSELLTM 640

  Fly   432 G----ASQHCGHYTAIGSTDTGSFY--------NFDDSYVRP-------IAMHSVCNTNAYIMFF 477
            |    |.:...::|.....:..|.:        :..:.:|.|       .|...|.|..:..|..
  Fly   641 GFPPEACKRACYHTKNSGLEAASNWLMEHIADEDISEPFVVPNNSIGDCAANQFVANPESLAMLM 705

  Fly   478 ELDLSQAASPAANRPNGVRLTNGHSTTPVPAATVSSPSPTRFIGPQLPAGGAN------------ 530
            .:...:..:.||     ::.|:|:    |..||....|....||.:..|..||
  Fly   706 SMGFDERQAVAA-----LKATDGN----VERATDWIFSHADSIGVEDAAPAANSSAAAASSTPNK 761

  Fly   531 -GYTNGNAQKTAIQFKQQNQQSPQNG 555
             .|.:|..:...:.|......|.|.|
  Fly   762 TNYRDGRGKYRLVAFISHMGTSAQVG 787

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.