DRSC/TRiP Functional Genomics Resources

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Protein Alignment scny and Usp24

DIOPT Version :10

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:XP_006503239.1 Gene:Usp24 / 329908 MGIID:1919936 Length:2637 Species:Mus musculus


Alignment Length:422 Identity:99/422 - (23%)
Similarity:146/422 - (34%) Gaps:114/422 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 GMINVGNTCYLNSTLQALLHIPALANWLVSEQAHLADCNVAEPGSGCIICAMTKTLLATQSNQSA 237
            |:.|.|.|||:|:..|.|...|.|...|:|     .|.:...|.........:......:|....
Mouse  1707 GLRNGGATCYMNAVFQQLYMQPGLPESLLS-----VDDDTDNPDDSVFYQVQSLFGHLMESKLQY 1766

  Fly   238 VRPFLIYSKLKQICKHMVVGRQEDAHEFLRFLVEAMERAYLMRFRNYKELDQLVKETTPLGQIFG 302
            ..|...:...|...|.:.|..|:||:||...|::.|:. ||.:...    :|:.|.|      |.
Mouse  1767 YVPENFWKIFKMWNKELYVREQQDAYEFFTSLIDQMDE-YLKKMGR----EQIFKNT------FQ 1820

  Fly   303 GYLRSEVRCLSCNHVSITFQHFQDLLLDIRKADSLEDAFEGHFSRERLE-DMGYKCEGCKKKVSA 366
            |....:..|..|.|.....:.|..|.|.:....|||.:.:.....|.|| ...|.||.||:|...
Mouse  1821 GIYSDQKICKDCPHRYEREEAFMALNLGVTSCQSLEISLDQFVRGEVLEGSNAYYCEKCKEKRIT 1885

  Fly   367 TKQFSLERAPITLCIQLKRF-----SMIGNKLTKQISFKSRIDLSKYAARSQAAQ---------- 416
            .|:..::..|..|.|.|.||     |....|..:||.|...:::..|.....|.|          
Mouse  1886 VKRTCIKSLPSVLVIHLMRFGFDWESGRSIKYDEQIRFPWMLNMEPYTVAGMARQDSSSEVGENG 1950

  Fly   417 ---------------AQPLTYRLVSMVTHLGASQHCGHYTAI----GSTDTGSFYNFDDSYV--- 459
                           |....|.||.::.|.|.: |.|||.:.    .....|.:|.|:|:.:   
Mouse  1951 RNMDQGGGGSPRKKVALTENYELVGVIVHSGQA-HAGHYYSFIKDRRGCGKGKWYKFNDTVIEEF 2014

  Fly   460 ----------------RPIAMHSVCNT---------NAYIMFFEL-------------------- 479
                            || .::...|.         |||::|::.                    
Mouse  2015 DLNDETLEYECFGGEYRP-KVYDQTNPYTDVRRRYWNAYMLFYQRVSDQNSPVLPKKSRVSVVRQ 2078

  Fly   480 ---DLSQAA----------SPAANRPNGVRLT 498
               |||.:|          ||..:|||..||:
Mouse  2079 EAEDLSLSAPSSPEISPQSSPRPHRPNNDRLS 2110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 87/366 (24%)
Usp24XP_006503239.1 UBA_UBP24 6..42 CDD:270472
Ubl_UBP24 972..1050 CDD:340585
peptidase_C19C 1704..2061 CDD:239124 88/371 (24%)
Blue background indicates that the domain is not in the aligned region.

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