DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scny and Usp42

DIOPT Version :10

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:NP_001099379.1 Gene:Usp42 / 288482 RGDID:1305231 Length:1325 Species:Rattus norvegicus


Alignment Length:876 Identity:239/876 - (27%)
Similarity:382/876 - (43%) Gaps:179/876 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 GAINGFSGKNN----TGKLVGANGHDNNGARKQAEHPNNQSHHINHHNHQHPTSNPNE------L 144
            ||::..|..:|    .|.:.||..::|:...::::                 .|.|.:      :
  Rat    38 GAVSSISDVSNHTLSLGPVPGAVVYNNSSVPEKSK-----------------PSPPKDQVLGDGI 85

  Fly   145 PKPKRVLYPRENIRIGWKQSERKWQVGTGMINVGNTCYLNSTLQALLHIPALANWLVSEQAHLAD 209
            ..|::||:|.|.|.:.|:||.|   ||.|:.|:||||:.|:.||.|.:.|.|||:::|.: |...
  Rat    86 APPQKVLFPSEKICLKWQQSHR---VGAGLQNLGNTCFANAALQCLTYTPPLANYMLSHE-HSKT 146

  Fly   210 CNVAEPGSGCIICAMTKTLLATQSNQ-SAVRPFLIYSKLKQICKHMVVGRQEDAHEFLRFLVEAM 273
            |: ||  ..|::|.|...:....||. ..::|..:.:::::|.:|...|.||||||||::.|:||
  Rat   147 CH-AE--GFCMMCTMQTHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAM 208

  Fly   274 ERAYLMRFRNYKELDQLVKETTPLGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDIRKADSLE 338
            ::|.|   ....:||:..:.||.:.|||||||||.|:||:|..||.||..:.|:.|:|:.|.|:.
  Rat   209 QKACL---NGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVT 270

  Fly   339 DAFEGHFSRERLE-DMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRF-SMIGNKLTKQISFKS 401
            .|.|.....|:|: :..|||..|||.|.|:|:|::.|:...|.|.|||| :..|.|:.|.:.:..
  Rat   271 KALEQFVKPEQLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRFANFTGGKIAKDVKYPE 335

  Fly   402 RIDLSKYAARSQAAQAQPLTYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYNFDDSYVRPIAMHS 466
            .:|:..|.::   ...:|:.|.|.:::.|.|.:.|.|||........|.:|..:||.|....:.|
  Rat   336 YLDIRPYMSQ---PNGEPIIYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRS 397

  Fly   467 VCNTNAYIMFFELDLSQAASPAANRPNGVRLTNGHSTTPVPAATVSSPSP-------------TR 518
            |.|..||::|:            .|.:.|: ..|.:|.|..:...|||.|             ..
  Rat   398 VLNQQAYVLFY------------IRSHDVK-NGGETTHPAHSPGQSSPRPGISQRVVNSKQAAPG 449

  Fly   519 FIGPQLPAGGANGYTNGNAQKTAIQFKQQNQQSPQNGLQLGTGKFQDTAKPPLVGAHAKGEATSA 583
            |||||||........:.|                      ||...:||            .::|.
  Rat   450 FIGPQLPPHVMKNTPHLN----------------------GTTPVKDT------------PSSSV 480

  Fly   584 PTANGNKS---SSPSSNSSS-NHKSINQQQYLPISSDDE----DIEDEMKPRPTTAQL------- 633
            .:.|||.|   :||::.|:| .:.|:|:...:|.....:    .|.:::..|...|||       
  Rat   481 SSPNGNTSVNRASPATASTSVQNWSVNRPSVIPEHPKKQKITISIHNKLPVRQGQAQLNNNLHGP 545

  Fly   634 ----PSMPNMTENHTEPKAKSPVKIQVKTPVKTPLKSLVPYESASEEEEAPLPNPRKR------- 687
                ||....:...|.|.|       :::....|..|:.|.||..:    |:.|.:.:       
  Rat   546 CLEAPSKAAPSSTITNPSA-------IQSTSNAPTTSVSPSESCPK----PMVNGKAKVGSSVLV 599

  Fly   688 PSG-EDSSESDQESGQTNGHSKTNG----SHTNGSASSSVHVNNSKQKTDAIDEIFKSLKKSADS 747
            |.| |.|.|||:||   .|.:|.||    :.|..|...:...:......:..:.:..:...||||
  Rat   600 PYGAESSEESDEES---KGLAKENGVDMMTSTQSSRPETADEDGEASPHELQESVMLNGANSADS 661

  Fly   748 DEDDDE---EEPSIQLTNGWHPQ----KQSQSQSKAPPSP-KTPP---------------SPAVI 789
            |..:..   :..|.|:....|.:    |.:....|..|:| ::.|               .|||.
  Rat   662 DSRESSLAFDSASCQVQPDLHTENLFNKLNGLPGKVTPAPLQSVPEDKILETFKLTNQAKGPAVE 726

  Fly   790 KSKTGIWKVTRNDEVDAIEDDVDVVVVEGSPVKIPTPNKNHRNPFSSSKPSTDSPATPGAKRQKL 854
            :|    |..|......|.....:.:..|.||::||....|.    |...|||.||..|.....|.
  Rat   727 ES----WTTTGGSSPRASVSQPEPITDETSPLEIPEAVTNG----SMKTPSTTSPLEPTISCTKE 783

  Fly   855 LNGSALKSHQQPRVGNGYQSNATSNGSTINE 885
            .:...:.|.:...|.....:...|.|:|:.:
  Rat   784 DSSVVVVSAEPMEVLPSVPALCNSTGTTLGD 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 113/308 (37%)
Usp42NP_001099379.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..38 239/876 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 64..86 3/38 (8%)
Peptidase_C19E 109..409 CDD:239126 114/321 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 416..502 28/119 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 539..590 12/61 (20%)
DUF5585 567..952 CDD:465521 61/263 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 602..674 19/74 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 718..780 20/69 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 802..849 3/13 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 879..1032
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1146..1259
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1290..1325
Blue background indicates that the domain is not in the aligned region.

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