DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment scny and usp-46

DIOPT Version :10

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:NP_499162.2 Gene:usp-46 / 176381 WormBaseID:WBGene00011216 Length:426 Species:Caenorhabditis elegans


Alignment Length:397 Identity:97/397 - (24%)
Similarity:155/397 - (39%) Gaps:86/397 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 GMINVGNTCYLNSTLQALLHIPALANWLVSEQAHLADCNVAEPGSGCIICAMTKTLLATQSNQSA 237
            |::|.|||||.||.:|||.........:::.:..|.....::......:..:..::.:.:.....
 Worm    28 GLVNFGNTCYCNSVIQALFFCRPFREKVLNYKQTLKKSGASKDNLVTCLADLFHSIASQKRRVGT 92

  Fly   238 VRPFLIYSKLKQICKHMVVGRQEDAHEFLRFLVEAM----------ERAYLMRFRNYKELDQLVK 292
            :.|....:|||:..:......|:|||||..:|:..:          ||....|....|:.:..|.
 Worm    93 IAPKRFITKLKKENELFDNYMQQDAHEFFNYLINTISETLIQEKIAEREKASRHGTLKKGNVTVN 157

  Fly   293 -----------------------------------ETTPLGQIFGGYLRSEVRCLSCNHVSITFQ 322
                                               .||.:.:||.|.|.:|.|||||..||...:
 Worm   158 LAPATAGLPRSDEKGTSERNGGITVEGNEFLNKSDTTTWIHEIFQGILTNETRCLSCETVSSKDE 222

  Fly   323 HFQDLLLDIRKADSLEDAFEGHFSRERL-EDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRF 386
            .|.||.:|:.:..|:..........|.| .|..|.||.|..|..|.|:..:::.|..|.:.||||
 Worm   223 DFLDLSIDVEQNTSISHCLRVFSETETLCGDQKYFCETCSSKQEAQKRMRIKKPPQLLALHLKRF 287

  Fly   387 SMI-----GNKLTKQISFKSRIDLSKYAARSQAAQAQPLTYRLVSMVTHLGASQHCGHYTAIGST 446
            ..:     ..||:.::.|...:.|...   |..|:.....|.||:.|.|.||:.:.|||..:  .
 Worm   288 KFVEPLNRHTKLSYRVVFPLELRLFNV---SDDAEYGDRMYDLVATVVHCGATPNRGHYITL--V 347

  Fly   447 DTGSFY-NFDDSYVRPIAMHSV------------------------CNTNAYIMFFELDLSQAAS 486
            .:.||: .|||..|..:.:.|:                        .:.:|||:|:     ||..
 Worm   348 KSNSFWLVFDDDIVEKLEVSSMEEFSGMSTDANIQMPPGNQSAPQKNSESAYILFY-----QARD 407

  Fly   487 PAANRPN 493
            .||:.||
 Worm   408 YAADDPN 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 90/379 (24%)
usp-46NP_499162.2 Peptidase_C19G 28..404 CDD:239128 91/385 (24%)

Return to query results.
Submit another query.