DRSC/TRiP Functional Genomics Resources

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Protein Alignment scny and usp49

DIOPT Version :9

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:XP_002933022.1 Gene:usp49 / 100488823 XenbaseID:XB-GENE-976521 Length:686 Species:Xenopus tropicalis


Alignment Length:431 Identity:105/431 - (24%)
Similarity:168/431 - (38%) Gaps:97/431 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 TGMINVGNTCYLNSTLQALLHI-----------PALANWLVSEQAHLADCNVAEPGSGCII---- 221
            ||:.|:|||||:||.||.|.|:           |:....|::.........|.:.|.|..:    
 Frog   256 TGLRNLGNTCYMNSILQVLSHLQKFRECFLTLDPSEKEELLARTGTNGKRRVGDAGGGHPVGGIG 320

  Fly   222 ----CAMTKTLLATQSNQSAVRPFLIYSKLKQICKHMVVGR------------------------ 258
                .::||:|...|..:.:.:...:..:|..:.:.|..|:                        
 Frog   321 LNGGSSITKSLELIQPKEPSTKHLSLCHELHTLFRVMWSGKWALVSPFAMLHSVWSLIPAFRGYD 385

  Fly   259 QEDAHEFLRFLV---------EAMERAYLMRFRNYKELDQLVKETTPLGQIFGGYLRSEVRCLSC 314
            |:||.|||..|:         |..:|..|:.....|...|::|   .:..||.|.|.|:|.||.|
 Frog   386 QQDAQEFLCELLDKVQQELESEGSKRRILIPISQRKLTKQVLK---VVNTIFHGQLLSQVTCLKC 447

  Fly   315 NHVSITFQHFQDLLLDIRK---------------ADSLEDAFEGHFSRERLEDMGYKCEGCKKK- 363
            ::.|.|.:.|.||.|:..:               ..:|.:........|.||...|.|:.|..| 
 Frog   448 SYKSDTVEPFWDLSLEFPERYHSQEKGIAPVTTTECTLTEMLAKFTETEALEGRIYACDQCNSKR 512

  Fly   364 ----------VSATKQFSLERAPITLCIQLKRFSMIG----NKLTKQISFKSRIDLSKYAARSQA 414
                      ..|.||..:.|.|..|.:.||||...|    .|:...:.|...:::..| .||..
 Frog   513 RKSSPKPLVLSEAKKQLMIFRLPQVLRLHLKRFRWSGRNHREKIGVHVFFDQVLNMEPY-CRSVL 576

  Fly   415 AQAQP--LTYRLVSMVTHLGASQHCGHYTA-IGSTDTGSFYNFDDSYVRPIAMHSVCNTNAYIMF 476
            ..:.|  ..|.|.::|.|.|.....||||| ..:|:.|.:.:.:||.:...::..||.|.|||:|
 Frog   577 PPSNPEAYLYDLSAVVMHHGKGFGSGHYTAYCYNTEGGFWVHCNDSKLNMCSVEEVCRTQAYILF 641

  Fly   477 FELDLSQAASPAANRPNGVRLTNGHSTTPVPAATVSSPSPT 517
            :        :..:|..|.|......:...:|...:...:|:
 Frog   642 Y--------TQRSNTQNSVHGNKTQTNAGIPELNIPPQAPS 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 99/389 (25%)
UCH 172..477 CDD:278850 99/389 (25%)
Asp-B-Hydro_N <617..>731 CDD:191249
usp49XP_002933022.1 zf-UBP 26..87 CDD:366940
COG4372 <96..>239 CDD:226809
UCH 256..642 CDD:366104 99/389 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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