DRSC/TRiP Functional Genomics Resources

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Protein Alignment scny and usp12b

DIOPT Version :10

Sequence 1:NP_729092.1 Gene:scny / 38648 FlyBaseID:FBgn0260936 Length:1038 Species:Drosophila melanogaster
Sequence 2:NP_001106637.1 Gene:usp12b / 100127879 XenbaseID:XB-GENE-5749343 Length:369 Species:Xenopus tropicalis


Alignment Length:344 Identity:93/344 - (27%)
Similarity:153/344 - (44%) Gaps:55/344 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 GMINVGNTCYLNSTLQALLHIPALANWLVS------EQAHLADCNVAEPGSGCIICAMTKTLLAT 231
            |::|.|||||.||.||||.........:::      ::..|..|           .|.....:||
 Frog    40 GLVNFGNTCYCNSVLQALYFCRPFREKVLAYKVQPRKKESLLTC-----------LADLFNSIAT 93

  Fly   232 QSNQSAVRP---FLIYSKLKQICKHMVVGRQEDAHEFLRFLVEAMERAYLMRFRNYKELDQLVKE 293
            |..:..|.|   |:  |:|::..:......|:||||||.:|:..:....|...:..|:..:|...
 Frog    94 QKKKVGVIPPKKFI--SRLRKENELFDNYMQQDAHEFLNYLLNTIADLLLEERKQEKQNGKLQNG 156

  Fly   294 T-----------TPLGQIFGGYLRSEVRCLSCNHVSITFQHFQDLLLDIRKADSLEDAFEGHFSR 347
            |           |.:.:||.|.|.:|.|||:|..||...:.|.||.:|:.:..|:.....|..:.
 Frog   157 TLEAPEPEKSDLTWVHEIFQGTLTNETRCLNCEAVSSKDEDFLDLSVDVEQNTSITHCLRGFSNT 221

  Fly   348 ERL-EDMGYKCEGCKKKVSATKQFSLERAPITLCIQLKRFSMIG-----NKLTKQISFKSRIDLS 406
            |.| .:..|.||.|:.|..|.|:..:::.|:.|.:.||||..:.     .||:.::.|.  ::|.
 Frog   222 ETLCSEYKYYCEQCRSKQEAQKRMRVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFP--LELR 284

  Fly   407 KYAARSQAAQAQPLTYRLVSMVTHLGASQHCGHYTAIGSTDTGSFYNFDDSYVRPIAMHSV---- 467
            .:.....|.....: |.||::|.|.|:..:.|||..|..:. |.:..|||..|..|...::    
 Frog   285 LFNTSGDATNPDRM-YDLVAVVVHCGSGPNRGHYITIVKSH-GFWLLFDDDIVEKIDAQAIEEFY 347

  Fly   468 --------CNTNAYIMFFE 478
                    .:.:.||:|::
 Frog   348 GLTSDISKNSESGYILFYQ 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scnyNP_729092.1 Peptidase_C19E 171..477 CDD:239126 92/341 (27%)
usp12bNP_001106637.1 Peptidase_C19G 40..366 CDD:239128 93/342 (27%)

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