DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp47 and usp40

DIOPT Version :9

Sequence 1:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster
Sequence 2:XP_001921353.3 Gene:usp40 / 402834 ZFINID:ZDB-GENE-060518-5 Length:1263 Species:Danio rerio


Alignment Length:1420 Identity:308/1420 - (21%)
Similarity:473/1420 - (33%) Gaps:473/1420 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 PRGYV---GLVNQAMTCYLNSLLQALFMTPEFRNALYRWEFDN----------DNEAKNIPYQLQ 443
            |||.:   |:.||..|||||||:|.|..|||||..|:....|.          :.:.:.||.:||
Zfish    31 PRGKIKLCGIKNQGGTCYLNSLIQTLLFTPEFREELFHLGPDELGCLADKDKPEAKVRVIPLELQ 95

  Fly   444 KLFLNLQTSPKAAVETTDLTRSFGWDSTEAWQQHDIQELCRVMFDALEHKFKNTKQANLISNLYE 508
            :||.:|....:....|||||.||||.:.|...|.|:|||.|::|.|||....:|..::||..||.
Zfish    96 RLFSHLLLVDEQTASTTDLTDSFGWTNNEEMGQQDVQELNRILFSALESSLVDTSGSSLIHRLYH 160

  Fly   509 GKMNDYVKCLECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEAL-RAFVQPETLDGNNQYLCEK 572
            |.:.:.:.|.||:....|::.|||:.:.|      |....:|||| ..||:.|..:|||.|.|..
Zfish   161 GTLVNQITCKECSYISERQEDFLDLTVSV------SGVSGLEEALWNMFVEEEMFEGNNLYRCSG 219

  Fly   573 CKKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSGEQN 637
            |.:...|.|....:..|..||:.|.||:||:....|.|......||.|.||..|..:|       
Zfish   220 CGQLVRAAKSAKLRKLPPFLTISLLRFNFDFTKCERYKETGSYVFPLTFNLRPFCEQS------- 277

  Fly   638 SQLNGTVDDCSTADSGSAMEDDNLSSGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSGPY 702
                      :..||                                                .|
Zfish   278 ----------NWPDS------------------------------------------------EY 284

  Fly   703 LYELFAIMIHSGSASGGHYYAYIKDFDN-NEWFCFNDQNVTSITQEDIQRSFGGPNGSYYSSAYT 766
            .||||:::||.|...||||:.||||.|. ..|                             .|..
Zfish   285 SYELFSVIIHKGGCYGGHYHVYIKDIDQLGHW-----------------------------EAPE 320

  Fly   767 SSTNAYMLMYRQVDAKRNELVAKVADFPEHIKT-----LLPKLHSEEETR---VSRLGRHITVTD 823
            ...|..|.:..|  .:.|:...:..:....::|     :|..:.::||::   |.:||:.:    
Zfish   321 EEKNVKMKVKTQ--KQENKTEERKTESENSLETEDPLSVLTGILAQEESKCVLVDQLGQKL---- 379

  Fly   824 LALPDLYKPRVYFYNPSLKKMKITRVYVSQSFNINLVLMSAYEMLNVEQFAPLSRCRLVAYNSSM 888
                 |.|    ...|..||      |..|..:|:..|.|     :.|.|..:|....||..:.:
Zfish   380 -----LNK----IGTPWSKK------YKKQYGSISKFLQS-----HPEVFMLISNGTRVALKAGV 424

  Fly   889 DT------IIQSLESCTDPALTE---LRAAQN--------YSL-----------DFLLEYRAEDQ 925
            .|      ::.|..:.:.|..||   ..|.:|        :.|           |...:::.::.
Zfish   425 PTEASPPELVNSTAADSCPENTEPETATAGENEDPDQCHWFDLNDSTVTAITVKDIEKQFQGKES 489

  Fly   926 EFEVY--------PPNGITWYVFKVDLSTMAMDGPFLVYSAARE-------REASDVLRRSIALR 975
            .:.::        ||..|....:||.        |.|:.....|       |...|....||.:|
Zfish   490 AYMLFYRKTTLKRPPEAIGNPAYKVP--------PHLLEMVEEENAGLQHKRAEFDASSNSIEVR 546

  Fly   976 LHIS-EQQFLLATVRATVPK----AFVSYDPHPTPE----ALQHLQ-----NMANTQFKSITYFY 1026
            ||:: ...:....:..:.|.    ..|::|...|..    |:..:|     :||.|..|      
Zfish   547 LHLAPHYHWQNGALHPSAPGEDSIITVTFDRRKTVGDLRLAIYQMQDLWEGDMALTLAK------ 605

  Fly  1027 LNVP---------NTDAATLEMLGV----------------------------------PTVESV 1048
             |||         ..|..:|...||                                  |:||.:
Zfish   606 -NVPAGLHLYDTLTDDQMSLYSAGVRNGSDLFVWNGREVSGVVVQTGVEWEPVLLTVLRPSVEEL 669

  Fly  1049 ECASGGDVVDAAM---MNGVAPGH-----MSSSNDYDWRRYKRDLVEPMSQPSPSHGHESN---- 1101
            .|:...|...:.:   |.|.|.|.     :.:....|     ..|.:..|:|..|.|..|.    
Zfish   670 GCSEVSDTDGSGLVRFMKGFAGGATLGTVLEALGPQD-----ALLCQEQSRPGASGGGASGWRVF 729

  Fly  1102 -SEDSS-------LSDGDRTLV----ETDNMAHRGGGDSQVSSTSHS----------PQLSSPED 1144
             .:|..       |.|||..|:    |.|:......|| .|:.|:.|          ||....|:
Zfish   730 PPQDMQRTLRELFLKDGDALLLLQPEELDSSIFSLSGD-VVTVTTPSDCRWLQVEFCPQSGLKEE 793

  Fly  1145 EAASHDAMMRVHAYCNGNGSYAAADV----VDPLLLPTSTNHFFYATKVECVDVVGTGSSSGHQS 1205
            :....:...:..:..:.:|:...|.|    ::.|.|.....      .|||.             
Zfish   794 QEEEEEEQGKKRSKVSASGNMLLAVVKQKAIEELCLQDELG------GVECC------------- 839

  Fly  1206 DEEAQLRKPTRAYKLLVGTHMRMGAFKKHIEQLIQ-------VPAA-----HFKLQRKHDNNLSN 1258
                 ||:..|..|||...|..:......|..:..       ||.|     :|.:      .|..
Zfish   840 -----LRQMDRTGKLLPPVHEHLSVRDAGIRLMTSLYLCPGPVPTATQLFLYFSV------GLVP 893

  Fly  1259 NQNNSLVHLIEGETLTVE--LGKTLEPDEFKAKIHFLRLADIDNETSKLPCVCEWVYNANTTAEQ 1321
            :....|..::| |:|||:  |.|.||....:.:...||..|...|      :.|.:.:.|.:.::
Zfish   894 SVGQELEIIVE-ESLTVKECLKKMLEMTRLEGESWHLRRVDWCEE------IGEPLMDENASLKE 951

  Fly  1322 AK----KELVAKLHRIDAK-YATLSV------------------QNC------------------ 1345
            ||    ..||....|:..| :..|||                  ||.                  
Zfish   952 AKVIYGDTLVLIEGRLPPKGFLKLSVRMYMDMIDSCPELNHSKPQNAEGLATECSGSEMRFMGYV 1016

  Fly  1346 --------------------------------RIWLKGGRIPIKILSDDETLYCDMRSSIAAEFI 1378
                                            |:||..|:...:||..::.....::....||..
Zfish  1017 EISEEASLDDFKTQVMTLPALQDVCVPSPAFMRVWLLEGKKLARILRGNQMTLRKLKLGNGAEVC 1081

  Fly  1379 VQECEEEVDPQPKDDSLTLFVRRWCPAKLEFGKFQEITLD--QDSEIRLSLSQISDIPIDKLSYM 1441
            :|...:|.|...||  |.|.|:...|.:..:...:|...|  :|..             .|..|.
Zfish  1082 IQRLMKEEDLGLKD--LLLRVQMGVPGEKAYYPSEEFLWDAGRDGS-------------PKGLYA 1131

  Fly  1442 KLNSNF---PCTSISALSVNESSSW-------YSVPTTLDKYPLNSTQTGNIYLYKDRTVPAREL 1496
            .|.:::   |...:.|..:.:..||       ..|.....|....|.|....||.....:..:.|
Zfish  1132 ALAAHYGLAPDNLLLAKHLPDKHSWMPISNWTQQVSKRKKKRKAESLQAAPFYLKDGDIIGVKNL 1196

  Fly  1497 TLEERRLMNAREKARLDRVGCVSTTRYAQRRERALKIYLDSPEKSSNVTASAPMD 1551
            .::..:.....|    |.:|     :...|.|.|     :...:.|.||..:.:|
Zfish  1197 LIDNNKEFTTLE----DEIG-----QLRLREEVA-----NQNTRGSTVTGESSLD 1237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp47NP_523937.2 TEBP_beta <119..234 CDD:254188
Rib_recp_KP_reg 122..265 CDD:282899
peptidase_C19C 394..780 CDD:239124 118/400 (30%)
UCH 395..776 CDD:278850 116/395 (29%)
usp40XP_001921353.3 Peptidase_C19 37..316 CDD:271592 112/349 (32%)
UCH_1 39..308 CDD:290159 108/339 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5077
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D77113at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24006
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.920

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