DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp47 and Usp9y

DIOPT Version :9

Sequence 1:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster
Sequence 2:NP_683745.2 Gene:Usp9y / 107868 MGIID:1313274 Length:2556 Species:Mus musculus


Alignment Length:1422 Identity:286/1422 - (20%)
Similarity:473/1422 - (33%) Gaps:536/1422 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 LQPHDNKDLVNLNAL------------------------ESQLMY--EVAGFEPQLKNHLILLPS 93
            |.|.|:..|..|.||                        .||::|  ||.        :.:|:|:
Mouse  1047 LMPPDSTTLEQLRALCSDHVNLGERRLGQSLHSLFFGSSASQVLYLTEVV--------YTLLMPA 1103

  Fly    94 GSWDGDVTKRFE--------LPIKRVVVKKVMKSDGEKAKSPATGEKKKR--------------- 135
            |:...|::..|:        ||:   |:..:::::    ..|.|..:.:|               
Mouse  1104 GAPLADISSDFQYHFLKSGGLPL---VLSMLIQNN----FLPNTDVETRRDAYFSALKIAKLLLT 1161

  Fly   136 VVG-------EKTKKKPASGS--SSPSKAKTTSEDSLAKTSISSESSPEKTSKIKTTAAKISKPG 191
            :||       .:..:..|.|:  .:|....|..:..:.:.::.|..:|.....::..:..:::..
Mouse  1162 IVGYGHVQAIAEACQPVADGTDPKTPINQVTHDQAVVLQNALQSIPNPSSECMLRNVSVHLAQQI 1226

  Fly   192 SEKAPRASPEEC-----------------------PELSTEINSKNTSSESPVAKKTAKVTSKPT 233
            |..|.|..|:.|                       .|..||.....||:.|.:..|..:|..: .
Mouse  1227 SGLASRYIPDICVIRAIQKIIWAAGCGSLELVFSPNEDITETYKMTTSTRSNLEVKDEQVCCE-A 1290

  Fly   234 LELLS------PIKPSSPIKE-----------LDC--EPVDTLSKQQ------------------ 261
            ||:::      |....|..||           |.|  :.|..|:::|                  
Mouse  1291 LEVMTLCFALIPTAMDSLNKEKAWQSFVIDLLLYCPSKTVRQLAQEQFFLICTRCCMGHRPLLFF 1355

  Fly   262 ------------------------LSEQLQLYPQGRNLISPVDDAPSDLFISDAEQLSDDDLALG 302
                                    |..:|..|....|:..|           :.:.|.:|::   
Mouse  1356 ITLLFTILGGAANEKGKHSDVYFTLLRRLLTYAYNSNIQVP-----------NVDVLLNDEI--- 1406

  Fly   303 ASASPTMLGPGYDYGAPTGDSDV-----EGVTGVT-------DPST---IGTDDG---------- 342
                 ..|....||...||:::|     ||..|||       .|..   ||...|          
Mouse  1407 -----DWLKRVRDYIKNTGETNVEDPILEGHLGVTKELLSFQSPEKKYHIGCKTGGANLVKELID 1466

  Fly   343 --TYPALSNFYRRKYGGDELRAWQRVNTTGAD--------------------------------F 373
              .:|| |..|.:.....||...|.:...|:.                                :
Mouse  1467 YFIFPA-SKAYLQYMRSGELPIKQAIPVCGSPATINAGFELLVALAFGCVRNLKQIVNCLTELFY 1530

  Fly   374 VSSATTETEAEARQASL---GPR---GYVGLVNQAMTCYLNSLLQALFMTPEFRNALYR----WE 428
            :.:..|..||......|   |||   |:|||.|...|||:||::|.|:|.|..||::..    |.
Mouse  1531 IGTPVTTCEAVGEWEYLPPVGPRPPKGFVGLKNAGATCYMNSVIQQLYMIPSIRNSILAIDSIWS 1595

  Fly   429 FDNDN-------EAKN----------IPYQLQ-KLFLNLQTSPK----AAVETTDLTRSFG---- 467
            ..:|:       :::|          .|:|.: |..|:.....|    |.::...:|  ||    
Mouse  1596 DTDDDIFKGEKQDSENNVDPRDDVFRYPHQFEDKPTLSKVEDRKEYNIAVLKHLQIT--FGHLAA 1658

  Fly   468 -----------WDSTEAW-------QQHDIQELCRVMFDALEHKFKNTKQANLISNLYEGKMNDY 514
                       |.....|       :|||..|....:.|:|:..||......::|.:..|...|.
Mouse  1659 SQLQYYVPKGFWQQFRLWGEPVNLREQHDALEFFNSLVDSLDEAFKALGYPTVLSKVLGGSFADQ 1723

  Fly   515 VKCLECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEALRAFVQPETLDGNNQYLCEKCKKKCDA 579
            ..|..|......|::|..:.:.:|      .:.::.::|..:|:.:.|:|.|.|.||||.||.|.
Mouse  1724 KICQGCPHRYECEESFTTLNVDIR------NHQNLLDSLEQYVKGDLLEGANAYHCEKCDKKVDT 1782

  Fly   580 HKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSGEQNSQLNGTV 644
            .|.|..|..|.:||:.|||||:|::....||.||...||:.|::..:                  
Mouse  1783 VKRLLIKKLPSVLTIQLKRFDYDWERECAIKFNDYFEFPRELDMEPY------------------ 1829

  Fly   645 DDCSTADSGSAMEDDNLSSGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSGPYLYELFAI 709
                                  |.|.:::.|.|..:....:...:..|:|...||..  |.|..:
Mouse  1830 ----------------------TVAGATKLEGDSVNPQTQLIKQNEQSESVIPGSTK--YRLVGV 1870

  Fly   710 MIHSGSASGGHYYAYI-----KDFDNNEWFCFNDQNVTSITQEDIQ----RSFGGPNGSYYSSAY 765
            ::|||.|:|||||:||     ||...:.||.|:|.:||....:|.:    :.||   |.|....:
Mouse  1871 LVHSGQANGGHYYSYIIQRNGKDSKRSHWFKFDDGDVTECKMDDDEEMKNQCFG---GEYMGEVF 1932

  Fly   766 TSST------------NAYMLMYRQVDAKRNELVAKVADFPEHIKTLLPKL-----HSEEETRVS 813
            ....            |||:|.|.::|         :.|..:.|.|.:.:|     |......:.
Mouse  1933 DHMMKRMSYRRQKRWWNAYILFYERMD---------ITDEDDEIITYISELTFTRPHQIMSPAIE 1988

  Fly   814 RLGRHITVTDLALPDLYKPRVYF----------YNPSLKK-MKITRVYVSQSFNINLVLMSAYEM 867
            |             .::|..|.|          |...:|| :....||:|.:...:.:|..|.::
Mouse  1989 R-------------SVWKQNVQFLHNQMQFSLEYFQFIKKLLTCNAVYLSPAPGQDHLLPEAEDI 2040

  Fly   868 LNVE-QFAPLSR------------------------CRLVAYNSSM-------------DTIIQS 894
            ..:. |.|  ||                        |.|:.::.::             :...:.
Mouse  2041 TMISIQLA--SRFLFTTGFHTKKIIRGPANDWYDALCILLRHSKNVRFWFVHNVLFNVSNRFSEY 2103

  Fly   895 LESCTDPALTELRAAQNYSLDFLLEYRAEDQEFEVYPPNGITWYVFKVDLSTMAMDGPF-LVYSA 958
            |..|..   .|:|......:.|:..:..:|..    .|:..|        |..|..||: .:|. 
Mouse  2104 LLECPS---AEIRGTFAKLIVFIAHFSLQDGS----SPSPFT--------SPFANPGPYSQIYD- 2152

  Fly   959 AREREASDVLRRSI--ALRLHISE-----QQFL----------LA----TVRATVPKAF--VSYD 1000
              ....||.|.:::  .||..:||     ||:.          ||    .::..||..|  ||.|
Mouse  2153 --NLSLSDHLLKAVLSLLRREVSEHGRHLQQYFNLFIMYASLGLAEKTQLLKLNVPATFMLVSLD 2215

  Fly  1001 PHPTPEALQHLQNMANTQFKSITYFYLNVPNTDAATLEMLGVPTVESVECASGGDVVDAAMMNGV 1065
            ..|.|               .:.|.|        |.|..|.....:.:.|.|....:.:: :||.
Mouse  2216 EGPGP---------------PVKYQY--------AELSKLHSVVSQLIRCCSVSSRMQSS-INGN 2256

  Fly  1066 AP-----GHMSSSN----------DYDWRR--YKRDLVEPMSQPSPSHGHESNSEDS 1105
            .|     |..:.|.          |..:.|  |.:.::|..          |||||:
Mouse  2257 PPLPNPFGDPNLSQPIMPIQQNVADILFMRTTYMKKVIEDC----------SNSEDT 2303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp47NP_523937.2 TEBP_beta <119..234 CDD:254188 24/161 (15%)
Rib_recp_KP_reg 122..265 CDD:282899 36/250 (14%)
peptidase_C19C 394..780 CDD:239124 117/454 (26%)
UCH 395..776 CDD:278850 115/449 (26%)
Usp9yNP_683745.2 peptidase_C19C 1557..1960 CDD:239124 118/464 (25%)
UCH 1559..1955 CDD:278850 115/448 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5077
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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