DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp47 and usp40

DIOPT Version :9

Sequence 1:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster
Sequence 2:XP_002932051.3 Gene:usp40 / 100486255 XenbaseID:XB-GENE-980927 Length:1226 Species:Xenopus tropicalis


Alignment Length:1373 Identity:299/1373 - (21%)
Similarity:454/1373 - (33%) Gaps:482/1373 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 PRG---YVGLVNQAMTCYLNSLLQALFMTPEFRNALYRW---------EFDN-DNEAKNIPYQLQ 443
            |||   ..||.||..|||||||||.||.|||||.||:..         |.|. |:..:.||.|||
 Frog    36 PRGDTRLSGLRNQGGTCYLNSLLQTLFFTPEFREALFALGPKELGSLEEKDTPDSRVRIIPLQLQ 100

  Fly   444 KLFLNLQTSPKAAVETTDLTRSFGWDSTEAWQQHDIQELCRVMFDALEHKFKNTKQANLISNLYE 508
            :||..|....:.|:.|||||.||||:|:|...|||:|||.|::|.|||...:.|...:||..||.
 Frog   101 RLFAQLLLLDQQALSTTDLTESFGWNSSEETSQHDVQELNRILFSALESSLEGTSGHDLIKRLYH 165

  Fly   509 GKMNDYVKCLECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEAL-RAFVQPETLDGNNQYLCEK 572
            |.:.:.::|.||.....|::.|||:.:.|:      ..||:|.:| ..:::.|..||:|.|.|..
 Frog   166 GTIVNCIQCKECGYISERQEDFLDLTVAVK------GVGSLENSLCSMYLEEEHFDGDNLYRCGS 224

  Fly   573 CKKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSGEQN 637
            |.|...|.|.......|..|||.|.||:||:....|.|...|.|||..|.:..|           
 Frog   225 CAKLVPATKSAKLGKLPPFLTLSLLRFNFDFVKCERYKETSRYTFPTRLIIRPF----------- 278

  Fly   638 SQLNGTVDDCSTADSGSAMEDDNLSSGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSGPY 702
                     |         |..||...|                                    |
 Frog   279 ---------C---------EQHNLEDSV------------------------------------Y 289

  Fly   703 LYELFAIMIHSGSASGGHYYAYIKDFDN------------------------------------- 730
            .||||:::||.|...||||:|||:|.|.                                     
 Frog   290 AYELFSVIIHKGGCYGGHYHAYIQDVDELGHWGLKEVAKKTASAQESESKQDCPIVALASIIAEA 354

  Fly   731 ----------------------------------------------------------------- 730
                                                                             
 Frog   355 GADQMVAVDQLGQKLLEYMGTSWNKTYRKQHGAMHKFLQSHPSVFQMSADGSLVGLAHSVPDTVG 419

  Fly   731 ---------------------NEWFCFNDQNVTSITQEDIQRSFGGPNGSYYSSAYTSSTNAYML 774
                                 ..||.|||..|..|.:.||::.|.|            ..:||||
 Frog   420 SDSESSRPGTPEKSQAPSRSAGHWFDFNDSKVEPIRETDIEKQFQG------------KESAYML 472

  Fly   775 MYRQVDAKRNELVAKVADF--PEHIKTLLPKLHSEEETRVSRLGRHITVTDLALPDLYKPRVYFY 837
            .||:.:..|.........|  ||||...:.:.:.|.:|:.:.....|...||.|           
 Frog   473 FYRKCEMNRPPEAKGNPRFGVPEHILNDMDQENIELQTKRTESALQINCMDLCL----------- 526

  Fly   838 NPSLKKMKITRVYVSQSFNI-NLVLMSAYEMLNVEQFAPLSRCRLVAYNSSMDTIIQSLESCTDP 901
                        ::|..:.. |..|..|:...|.:....:.|.|.|          :.|:.....
 Frog   527 ------------HLSSHYQYENGALHPAHPRNNSKLAIAIDRRRTV----------EDLKQLAFQ 569

  Fly   902 ALTELRAAQNYSLDFLLEYRAEDQEFEVYPPNGITWYVF------KVDLSTMAM-DG-PFLVYSA 958
            .|.|....|..|:..:|             |.|:  ::|      |:||.|..: || ...|:..
 Frog   570 VLDESLEGQVLSIARVL-------------PAGL--HIFQNLIDAKMDLVTAGITDGTDIFVWDG 619

  Fly   959 AREREASDVLRRSIALRLHISEQQFLLATVRATVPKAFVSYDPHPTPEALQHLQNMANTQFKSIT 1023
               ::...|:.:|.|      |...:|.|:...|                  ||..::.:|....
 Frog   620 ---KQVGGVMIQSGA------EFTPVLLTILRPV------------------LQTNSSAEFSESQ 657

  Fly  1024 YFYLNVPNTDAATLEMLGVPTVESVECASGGDVVDAAMMNGVAPGHMSSSNDYDWRRYKRDLVEP 1088
            ..:.:.........|:.|....|||.|                  ..||.|...|..|..|    
 Frog   658 RAFPSCACLKDIQKELAGPTCEESVLC------------------FPSSENSEQWSFYSAD---- 700

  Fly  1089 MSQPSPSHGHESNS--EDSSLSDGDRTLV-ETDNMAHRGGGDSQVSSTSHSPQLSSPEDEAASHD 1150
                      :||.  ::..|.||...|: :|     |..||..::|..|           .|.|
 Frog   701 ----------DSNKSLKELGLRDGSSILLFDT-----RSDGDVYLASERH-----------LSKD 739

  Fly  1151 A---MMRVHAYCNGNGSYAAADVVDPLLLPTSTNHFFYATKVECVDVVGTGSSSG------HQSD 1206
            |   .:.|..:|.....   .:.|..::.|.:|....:...||.:.:....|.:.      |:.:
 Frog   740 AKQNFLMVQDWCRQQDE---KETVKIIITPNTTIQDIHVKAVELLQLQEECSKNDTCLRPLHRKE 801

  Fly  1207 ------------EEAQLR-------------KPTRAYKLLV-GTHMRMGA-----------FKKH 1234
                        :||:|:             .|::.:...: ||.::.|:           .::.
 Frog   802 KLLPPVPESLTVQEAELKNGCTLGLCKGKAPSPSQIFLYFISGTDLQEGSEQEIILEETLTVRQS 866

  Fly  1235 IEQLIQ---VPAAHFKLQRKHD------NNLSNNQNN-SLVHLIEGETLTVELGKTLEPDEFKAK 1289
            :|:::.   :|.......||.|      ..||:.::. ..:::..|:||.:..|| |.|.     
 Frog   867 LERMLNKAGLPGKAGWHLRKMDWCYEAGEALSDEESTLKELNICAGDTLVITEGK-LPPK----- 925

  Fly  1290 IHFLRLA----------DIDNETSKLPCVCE-WVYNANTTAEQ-------------AKKELVAKL 1330
             .||:|:          |..|..:     || .....:||.:.             .:.|:...|
 Frog   926 -GFLKLSIWLYCPHTQQDAMNHVT-----CEPGALQTSTTEDNNMQEGGTSNFCSVGEIEISGDL 984

  Fly  1331 HRIDAKYATL-----------SVQNCRIWLKGGRIPIKILSDDETLYCDMRSSIAAEFIVQECEE 1384
            ...|.|...|           |.:..|:|....:...|||.....|..:.:........::..:.
 Frog   985 SLQDVKMQILTLPVFEALGIPSPEFLRVWTLENKHLGKILRSPPVLLSEYKLGSKPALCIEPLQV 1049

  Fly  1385 EVDPQPKDDSLTLFVRRWCPAKLEFGKFQEITLD--QDSEIRLSLSQIS---DIPIDKLSYMKLN 1444
            |.....||  |.|.|:...|.:..:....:|..|  :.......|.:|:   .:|.||:...|  
 Frog  1050 EECLGAKD--LVLRVQLSVPGERRYFPPVDIVWDISRGCTAPALLHRIAMHCSLPTDKVEIAK-- 1110

  Fly  1445 SNFPCTSISALSVNESSSW-YSVPTTLDKYPLNSTQTGNIYLYKDRTVPARELTLEERRLMNARE 1508
             :|| .....|.:   ||| ..|.....|..|.|.|....:|.....:..:.|.|::....:   
 Frog  1111 -HFP-EKYEWLPI---SSWTQHVSRKRKKKKLESLQGAPYHLKDGDIIGVKNLLLDDWTDFS--- 1167

  Fly  1509 KARLDRVG 1516
             :.:||:|
 Frog  1168 -SEIDRIG 1174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp47NP_523937.2 TEBP_beta <119..234 CDD:254188
Rib_recp_KP_reg 122..265 CDD:282899
peptidase_C19C 394..780 CDD:239124 141/522 (27%)
UCH 395..776 CDD:278850 138/514 (27%)
usp40XP_002932051.3 UBP12 <5..>69 CDD:227847 22/32 (69%)
Peptidase_C19 41..321 CDD:351799 123/350 (35%)
UBP12 <439..477 CDD:227847 17/49 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D77113at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24006
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

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