DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp47 and usp18

DIOPT Version :9

Sequence 1:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster
Sequence 2:XP_005164589.1 Gene:usp18 / 100334535 ZFINID:ZDB-GENE-100210-2 Length:337 Species:Danio rerio


Alignment Length:388 Identity:91/388 - (23%)
Similarity:163/388 - (42%) Gaps:83/388 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   393 RGYV--GLVNQAMTCYLNSLLQALFMTPEFRNALYRWEFDNDNEAKNIPYQLQKLFLNLQTSPKA 455
            |||.  ||.|..::|.:|:|||:...|.|..:.|.:|...:..|..|||.||:...|:::....:
Zfish    24 RGYEVRGLFNDGLSCCVNALLQSFSATTELLDILNKWNPSDGIEQSNIPLQLRNTLLSVRDPSHS 88

  Fly   456 AVETTDLTRSFGWDSTEAWQQHDIQELCRVMFDALEHKFKNTKQANLISNLYEGKMNDYVKCLEC 520
            |.....|...:. .:...:.|.|..|:..::.:....:..:.:.|..|.:||..::...|.|::|
Zfish    89 APHKGFLDCLYR-HAICRYTQQDADEIFHMILNLSLKQMPDHELAQEIRSLYTIEVETQVTCMDC 152

  Fly   521 NTEKTREDTFLDIPLPVRPFGSSSAYGSIEEALRAFVQPETLDGNNQYLCEKCKKKCDAHKGLHF 585
            .......:::..:||.:.     ....::|..:::|.:.:.|:.:.::.|::|:||.........
Zfish   153 TFIHRLPNSYFSLPLVIH-----EGENTLESCIKSFFKKQKLEVSEKFFCDRCEKKQPCAYEQKL 212

  Fly   586 KSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSGEQNSQLNGTVDDCSTA 650
            .|.|.||.:|||||..::..:.  ||:.:||||:||.::.|                        
Zfish   213 VSLPQILCVHLKRFRNEHGLIK--KLDSKVTFPETLKISVF------------------------ 251

  Fly   651 DSGSAMEDDNLSSGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSGPYLYELFAIMIHSGS 715
                               ::.|.||..:|..:..                  |.|||:::|.||
Zfish   252 -------------------AAGQSENAASDSPQAD------------------YSLFAVIVHIGS 279

  Fly   716 ASGGHYYAYIKDFDNNEWFCFNDQNVTSITQEDIQRSFGGPNGSYYSSAYTSSTNAYMLMYRQ 778
            |..|||.|:|:...:..|:..||..|...|.:|:|            ..|.....||:|:||:
Zfish   280 AMFGHYTAFIRQTQDQMWYYANDSRVNQATWKDVQ------------DTYKGRETAYLLLYRK 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp47NP_523937.2 TEBP_beta <119..234 CDD:254188
Rib_recp_KP_reg 122..265 CDD:282899
peptidase_C19C 394..780 CDD:239124 90/387 (23%)
UCH 395..776 CDD:278850 87/382 (23%)
usp18XP_005164589.1 UCH 28..328 CDD:278850 86/380 (23%)
Peptidase_C19 97..329 CDD:239072 65/312 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5077
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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