DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lin-28 and YBX3

DIOPT Version :10

Sequence 1:NP_647983.1 Gene:lin-28 / 38639 FlyBaseID:FBgn0035626 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_003642.3 Gene:YBX3 / 8531 HGNCID:2428 Length:372 Species:Homo sapiens


Alignment Length:118 Identity:42/118 - (35%)
Similarity:61/118 - (51%) Gaps:12/118 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SSTSSANPANLASPTEECGCVR-------LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSG 75
            ::|.:|..|:||:........:       ||..|||||..|:||:..||..::|||||:.|:.:.
Human    63 AATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNN 127

  Fly    76 ----FRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPRINRRTRR 124
                .||:|:.|.|||:.....:|.||..|:...|...:||.|... .||.||
Human   128 PRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD-RRRYRR 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lin-28NP_647983.1 CSP_CDS 41..101 CDD:239905 27/63 (43%)
YBX3NP_003642.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..82 5/18 (28%)
CSD 91..160 CDD:278729 29/68 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..372
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.