DRSC/TRiP Functional Genomics Resources

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Protein Alignment lin-28 and Ybx3

DIOPT Version :10

Sequence 1:NP_647983.1 Gene:lin-28 / 38639 FlyBaseID:FBgn0035626 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_114185.3 Gene:Ybx3 / 83807 RGDID:621056 Length:361 Species:Rattus norvegicus


Alignment Length:89 Identity:37/89 - (41%)
Similarity:50/89 - (56%) Gaps:5/89 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSG----FRSLGEQEEVEFECQRTSRGLEATR 100
            ||..|||||..|:||:..||..::|||||:.|:.:.    .||:|:.|.|||:.....:|.||..
  Rat    84 LGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAAN 148

  Fly   101 VSSRHGGSCQGSTYRPRINRRTRR 124
            |:...|...:||.|... .||.||
  Rat   149 VTGPDGVPVEGSRYAAD-RRRYRR 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lin-28NP_647983.1 CSP_CDS 41..101 CDD:239905 27/63 (43%)
Ybx3NP_114185.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..73
CSD 83..152 CDD:278729 29/67 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..361
Blue background indicates that the domain is not in the aligned region.

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