DRSC/TRiP Functional Genomics Resources

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Protein Alignment lin-28 and Lin28a

DIOPT Version :9

Sequence 1:NP_647983.1 Gene:lin-28 / 38639 FlyBaseID:FBgn0035626 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_665832.1 Gene:Lin28a / 83557 MGIID:1890546 Length:209 Species:Mus musculus


Alignment Length:205 Identity:76/205 - (37%)
Similarity:108/205 - (52%) Gaps:23/205 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MENVQLENGLERRTTSQSSTSSANPANLASPTEECGCVR-LGKCKWFNVAKGWGFLTPN------ 58
            :.|.|...|..:  .::.:...| |.:.|...:|...:. .|.||||||..|:|||:..      
Mouse     4 VSNQQFAGGCAK--AAEKAPEEA-PPDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVA 65

  Fly    59 -DGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPR----I 118
             |...:||||||.:.|.|||||.|.|.|||..:::::|||:.||:...|..|.||..||:    .
Mouse    66 LDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKNMQ 130

  Fly   119 NRRTRRMRCYNCGEFANHIASECALGPQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSS 183
            .||::..||||||...:| |.||.|.||||:||.|:..:|:.|.||.|       ..:..|:...
Mouse   131 KRRSKGDRCYNCGGLDHH-AKECKLPPQPKKCHFCQSINHMVASCPLK-------AQQGPSSQGK 187

  Fly   184 SSAAQEKSEE 193
            .:..:|:.||
Mouse   188 PAYFREEEEE 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lin-28NP_647983.1 CSP_CDS 41..101 CDD:239905 32/66 (48%)
Lin28aNP_665832.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 6/29 (21%)
CSP_CDS 42..111 CDD:239905 34/68 (50%)
Flexible linker 113..136 8/22 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 177..209 5/28 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167841970
Domainoid 1 1.000 66 1.000 Domainoid score I9890
eggNOG 1 0.900 - - E1_COG1278
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 129 1.000 Inparanoid score I4631
Isobase 1 0.950 - 0 Normalized mean entropy S4997
OMA 1 1.010 - - QHG45847
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000228
OrthoInspector 1 1.000 - - otm43801
orthoMCL 1 0.900 - - OOG6_105612
Panther 1 1.100 - - LDO PTHR46109
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4631
SonicParanoid 1 1.000 - - X1972
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.740

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