Protein Alignment lin-28 and GRP2

DIOPT Version :9

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: NP_195580.1
• Gene: GRP2 / 830024
• AraportID: AT4G38680
• Length: 203
• Species: Arabidopsis thaliana
• Alignment Length: 138
• Identity: 46/138 - (33%)
• Similarity: 60/138 - (43%)
• Gaps: 33/138 - (23%)

  Fly    39 RLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSR--------- 94
            |.|..|||:..||:||:||:|||.::|||||.|:..|||||..:|.||||.:..:.
plant    11 RKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNRPKAIDVS 75

  Fly    95 GLEATRVSSRHGGSCQGST-----------------------YRPRINRRTRRMRCYNCGEFANH 136
            |.:...|....||...|..                       |..|.........||.||| ..|
plant    76 GPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGGSDCYKCGE-PGH 139

  Fly   137 IASECALG 144
            :|.:|:.|
plant   140 MARDCSEG 147

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	30/68 (44%)
GRP2	NP_195580.1	CSD	11..77	CDD:278729	30/65 (46%)
		PTZ00368	131..>201	CDD:173561	9/18 (50%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	69	1.000	Domainoid score	I3429
eggNOG	1	0.900	-	-		E1_COG1278
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1604809at2759
OrthoFinder	1	1.000	-	-		FOG0000228
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	6	5.780