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Protein Alignment lin-28 and CSDP1
DIOPT Version :9
Sequence 1: | NP_647983.1 |
Gene: | lin-28 / 38639 |
FlyBaseID: | FBgn0035626 |
Length: | 195 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001320149.1 |
Gene: | CSDP1 / 829758 |
AraportID: | AT4G36020 |
Length: | 299 |
Species: | Arabidopsis thaliana |
Alignment Length: | 141 |
Identity: | 53/141 - (37%) |
Similarity: | 70/141 - (49%) |
Gaps: | 24/141 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG-LEATRVSSR 104
||..|||.:||:||:||:||..|:|||||.|...|:|||...:.|||...:.|.| .:|..|::.
plant 13 GKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAVNVTAP 77
Fly 105 HGGSCQGSTYRPRINRRTRRMR-------CYNCGEFANHIASECAL------GPQPKR----CHR 152
.|||.:... |.|....| ||||||. .||:.:|.: |.:..| |:.
plant 78 GGGSLKKEN-----NSRGNGARRGGGGSGCYNCGEL-GHISKDCGIGGGGGGGERRSRGGEGCYN 136
Fly 153 CRGEDHLHADC 163
|....|...||
plant 137 CGDTGHFARDC 147
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
lin-28 | NP_647983.1 |
CSP_CDS |
41..101 |
CDD:239905 |
30/60 (50%) |
CSDP1 | NP_001320149.1 |
None |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Domainoid |
1 |
1.000 |
69 |
1.000 |
Domainoid score |
I3429 |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1278 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1604809at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000228 |
OrthoInspector |
1 |
1.000 |
- |
- |
|
otm3561 |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
7 | 6.820 |
|
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