Protein Alignment lin-28 and AT3G43590

DIOPT Version :9

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: NP_189945.1
• Gene: AT3G43590 / 823456
• AraportID: AT3G43590
• Length: 551
• Species: Arabidopsis thaliana
• Alignment Length: 107
• Identity: 27/107 - (25%)
• Similarity: 39/107 - (36%)
• Gaps: 20/107 - (18%)

  Fly   105 HGGSCQGSTYR----------PRINRRTRRMRCYNCGEFANHIASEC--------ALGPQPKR-C 150
            |.|...|..|.          .|:........||.||| ..|.|.||        :.|.:.:. |
plant   295 HSGLACGRHYEESNENDSATPERLFNSREASECYRCGE-EGHFARECPNSSSISTSHGRESQTLC 358

  Fly   151 HRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQEKSE 192
            :||.|..|...:||:.:.........|.:::.|....:|.||
plant   359 YRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNKENSE 400

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905
AT3G43590	NP_189945.1	AIR1	130..280	CDD:227414
		PTZ00368	210..374	CDD:173561	22/79 (28%)
		ZnF_C2HC	327..342	CDD:197667	9/15 (60%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910