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Protein Alignment lin-28 and GRP2B
DIOPT Version :9
Sequence 1: | NP_647983.1 |
Gene: | lin-28 / 38639 |
FlyBaseID: | FBgn0035626 |
Length: | 195 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_179702.1 |
Gene: | GRP2B / 816641 |
AraportID: | AT2G21060 |
Length: | 201 |
Species: | Arabidopsis thaliana |
Alignment Length: | 182 |
Identity: | 53/182 - (29%) |
Similarity: | 71/182 - (39%) |
Gaps: | 58/182 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 39 RLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGL-EATRVS 102
|.|..|||:..||:||:||:|||.::|||||.|:..|||||..:|.|||:.:..:.|. :|..||
plant 15 RKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRPKAIEVS 79
Fly 103 SRHGGSCQGS--------------------------TYRPRINRRTRRMR--------CYNCGEF 133
...|...||: :|......|....| |:.|||
plant 80 GPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGGGGDNSCFKCGE- 143
Fly 134 ANHIASECAL----------------------GPQPKRCHRCRGEDHLHADC 163
..|:|.||:. |.....|:.|....|...||
plant 144 PGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Domainoid |
1 |
1.000 |
69 |
1.000 |
Domainoid score |
I3429 |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1278 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1604809at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000228 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
1 |
0.960 |
- |
- |
|
|
|
6 | 5.780 |
|
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