Protein Alignment lin-28 and CSP3

DIOPT Version :9

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: NP_565427.1
• Gene: CSP3 / 816297
• AraportID: AT2G17870
• Length: 301
• Species: Arabidopsis thaliana
• Alignment Length: 144
• Identity: 53/144 - (36%)
• Similarity: 71/144 - (49%)
• Gaps: 30/144 - (20%)

  Fly    40 LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG-LEATRVSS 103
            :||..||:..||:||:||:|||:|:|||||.|...|||||...|.||:|....|.| .:|..|::
plant    12 IGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKTKAIEVTA 76

  Fly   104 RHGGSCQGSTYRPRINRRTRRMR-----CYNCGEFANHIASECALGPQPK--------------R 149
            ..|||         :|::....|     |:|||| ..|:|.:|..|...|              .
plant    77 PGGGS---------LNKKENSSRGSGGNCFNCGE-VGHMAKDCDGGSGGKSFGGGGGRRSGGEGE 131

  Fly   150 CHRCRGEDHLHADC 163
            |:.|....|...||
plant   132 CYMCGDVGHFARDC 145

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	32/60 (53%)
CSP3	NP_565427.1	CSD	13..77	CDD:278729	33/63 (52%)
		PTZ00368	132..299	CDD:173561	5/14 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	69	1.000	Domainoid score	I3429
eggNOG	1	0.900	-	-		E1_COG1278
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1604809at2759
OrthoFinder	1	1.000	-	-		FOG0000228
OrthoInspector	1	1.000	-	-		otm3561
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	7	6.820