Protein Alignment lin-28 and CSP3

DIOPT Version :10

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: NP_565427.1
• Gene: CSP3 / 816297
• AraportID: AT2G17870
• Length: 301
• Species: Arabidopsis thaliana
• Alignment Length: 144
• Identity: 53/144 - (36%)
• Similarity: 71/144 - (49%)
• Gaps: 30/144 - (20%)

  Fly    40 LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRG-LEATRVSS 103
            :||..||:..||:||:||:|||:|:|||||.|...|||||...|.||:|....|.| .:|..|::
plant    12 IGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKTKAIEVTA 76

  Fly   104 RHGGSCQGSTYRPRINRRTRRMR-----CYNCGEFANHIASECALGPQPK--------------R 149
            ..|||         :|::....|     |:|||| ..|:|.:|..|...|              .
plant    77 PGGGS---------LNKKENSSRGSGGNCFNCGE-VGHMAKDCDGGSGGKSFGGGGGRRSGGEGE 131

  Fly   150 CHRCRGEDHLHADC 163
            |:.|....|...||
plant   132 CYMCGDVGHFARDC 145

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	32/60 (53%)
CSP3	NP_565427.1	CSD	13..77	CDD:278729	33/63 (52%)
		PTZ00368	132..299	CDD:173561	5/14 (36%)