Protein Alignment lin-28 and Lin28b

DIOPT Version :10

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: XP_038955078.1
• Gene: Lin28b / 689054
• RGDID: 1597432
• Length: 280
• Species: Rattus norvegicus
• Alignment Length: 201
• Identity: 74/201 - (36%)
• Similarity: 98/201 - (48%)
• Gaps: 44/201 - (21%)

  Fly    13 RTTSQSSTSSANPANLASP-------TEECGCVR-LGKCKWFNVAKGWGFLT-------PNDGGQ 62
            |:.:|.|::.........|       .:|...:| .|.||||||..|:||::       |.|...
  Rat     3 RSLNQGSSAPGGAGKGEEPEKLPELAEDESQVLRGTGHCKWFNVRMGFGFISMISREGNPLDIPV 67

  Fly    63 EVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPR---------- 117
            :||||||.:.|.|||||.|.|.|||..:::.:|||:.||:...|..|.||..||:
  Rat    68 DVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKGLESIRVTGPGGNPCLGSERRPKGKTLQKRKPK 132

  Fly   118 ----------------INRRTRRM--RCYNCGEFANHIASECALGPQPKRCHRCRGEDHLHADCP 164
                            :.....||  ||||||...:| |.||.|.||||:||.|:...|:.|:||
  Rat   133 ADRWRRQDLLMDQMWTVREEESRMIPRCYNCGGLDHH-AKECGLPPQPKKCHYCQSIMHMVANCP 196

  Fly   165 HKNVTQ 170
            ||.|.|
  Rat   197 HKLVAQ 202

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	32/66 (48%)
Lin28b	XP_038955078.1	CSP_CDS	38..108	CDD:239905	34/69 (49%)
		PTZ00368	<160..196	CDD:173561	19/36 (53%)