DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lin-28 and Lin28b

DIOPT Version :9

Sequence 1:NP_647983.1 Gene:lin-28 / 38639 FlyBaseID:FBgn0035626 Length:195 Species:Drosophila melanogaster
Sequence 2:XP_038955078.1 Gene:Lin28b / 689054 RGDID:1597432 Length:280 Species:Rattus norvegicus


Alignment Length:201 Identity:74/201 - (36%)
Similarity:98/201 - (48%) Gaps:44/201 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 RTTSQSSTSSANPANLASP-------TEECGCVR-LGKCKWFNVAKGWGFLT-------PNDGGQ 62
            |:.:|.|::.........|       .:|...:| .|.||||||..|:||::       |.|...
  Rat     3 RSLNQGSSAPGGAGKGEEPEKLPELAEDESQVLRGTGHCKWFNVRMGFGFISMISREGNPLDIPV 67

  Fly    63 EVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPR---------- 117
            :||||||.:.|.|||||.|.|.|||..:::.:|||:.||:...|..|.||..||:          
  Rat    68 DVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKGLESIRVTGPGGNPCLGSERRPKGKTLQKRKPK 132

  Fly   118 ----------------INRRTRRM--RCYNCGEFANHIASECALGPQPKRCHRCRGEDHLHADCP 164
                            :.....||  ||||||...:| |.||.|.||||:||.|:...|:.|:||
  Rat   133 ADRWRRQDLLMDQMWTVREEESRMIPRCYNCGGLDHH-AKECGLPPQPKKCHYCQSIMHMVANCP 196

  Fly   165 HKNVTQ 170
            ||.|.|
  Rat   197 HKLVAQ 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lin-28NP_647983.1 CSP_CDS 41..101 CDD:239905 32/66 (48%)
Lin28bXP_038955078.1 CSP_CDS 38..108 CDD:239905 34/69 (49%)
PTZ00368 <160..196 CDD:173561 19/36 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345363
Domainoid 1 1.000 66 1.000 Domainoid score I9700
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H47607
Inparanoid 1 1.050 123 1.000 Inparanoid score I4638
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1604809at2759
OrthoFinder 1 1.000 - - FOG0000228
OrthoInspector 1 1.000 - - otm45883
orthoMCL 1 0.900 - - OOG6_105612
Panther 1 1.100 - - O PTHR46109
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1972
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.900

Return to query results.
Submit another query.