Sequence 1: | NP_647983.1 | Gene: | lin-28 / 38639 | FlyBaseID: | FBgn0035626 | Length: | 195 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038955078.1 | Gene: | Lin28b / 689054 | RGDID: | 1597432 | Length: | 280 | Species: | Rattus norvegicus |
Alignment Length: | 201 | Identity: | 74/201 - (36%) |
---|---|---|---|
Similarity: | 98/201 - (48%) | Gaps: | 44/201 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 RTTSQSSTSSANPANLASP-------TEECGCVR-LGKCKWFNVAKGWGFLT-------PNDGGQ 62
Fly 63 EVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPR---------- 117
Fly 118 ----------------INRRTRRM--RCYNCGEFANHIASECALGPQPKRCHRCRGEDHLHADCP 164
Fly 165 HKNVTQ 170 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
lin-28 | NP_647983.1 | CSP_CDS | 41..101 | CDD:239905 | 32/66 (48%) |
Lin28b | XP_038955078.1 | CSP_CDS | 38..108 | CDD:239905 | 34/69 (49%) |
PTZ00368 | <160..196 | CDD:173561 | 19/36 (53%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166345363 | |
Domainoid | 1 | 1.000 | 66 | 1.000 | Domainoid score | I9700 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H47607 | |
Inparanoid | 1 | 1.050 | 123 | 1.000 | Inparanoid score | I4638 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1604809at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000228 | |
OrthoInspector | 1 | 1.000 | - | - | otm45883 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105612 | |
Panther | 1 | 1.100 | - | - | O | PTHR46109 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X1972 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
13 | 12.900 |