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Protein Alignment lin-28 and ybx3
DIOPT Version :9
Sequence 1: | NP_647983.1 |
Gene: | lin-28 / 38639 |
FlyBaseID: | FBgn0035626 |
Length: | 195 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001015855.1 |
Gene: | ybx3 / 548572 |
XenbaseID: | XB-GENE-1007558 |
Length: | 248 |
Species: | Xenopus tropicalis |
Alignment Length: | 114 |
Identity: | 42/114 - (36%) |
Similarity: | 59/114 - (51%) |
Gaps: | 12/114 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 15 TSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSG---- 75
:|.|::|......||:..: |..|||||..|:||:..||..::|||||:.|:.:.
Frog 19 SSPSASSEIERKVLATKVQ-------GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKY 76
Fly 76 FRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPRINRRTRR 124
.||:|:.|.|||:.....:|.||..|:...|...|||.|... .||.||
Frog 77 LRSVGDGEVVEFDVVAGEKGAEAANVTGPKGAPVQGSRYAAD-RRRYRR 124
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
lin-28 | NP_647983.1 |
CSP_CDS |
41..101 |
CDD:239905 |
27/63 (43%) |
ybx3 | NP_001015855.1 |
CSD |
36..105 |
CDD:278729 |
28/75 (37%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1604809at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000228 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 2.010 |
|
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