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Protein Alignment lin-28 and lin28a
DIOPT Version :9
Sequence 1: | NP_647983.1 |
Gene: | lin-28 / 38639 |
FlyBaseID: | FBgn0035626 |
Length: | 195 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001016266.1 |
Gene: | lin28a / 548523 |
XenbaseID: | XB-GENE-491384 |
Length: | 195 |
Species: | Xenopus tropicalis |
Alignment Length: | 150 |
Identity: | 70/150 - (46%) |
Similarity: | 91/150 - (60%) |
Gaps: | 12/150 - (8%) |
- Green bases have known domain annotations that are detailed below.
Fly 41 GKCKWFNVAKGWGFL--TPNDGGQ-----EVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEA 98
|.||||||..|:||| |..:|.. :||||||.:.|.|||||.|.|.|||..:::|:|||:
Frog 36 GVCKWFNVRMGFGFLTMTKKEGTDLETPVDVFVHQSKLHMEGFRSLKEGESVEFTFKKSSKGLES 100
Fly 99 TRVSSRHGGSCQGSTYRPRI----NRRTRRMRCYNCGEFANHIASECALGPQPKRCHRCRGEDHL 159
|||:...|..|.||..||:: .||.:..||||||...:| |.||.|.||||:||.|:..:|:
Frog 101 TRVTGPGGAPCIGSERRPKVKGQQKRRQKGDRCYNCGGLDHH-AKECKLPPQPKKCHFCQSPNHM 164
Fly 160 HADCPHKNVTQSHSNSKSIS 179
.|.||.|....::...:.||
Frog 165 VAQCPAKASQAANLEEQPIS 184
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
1 |
1.000 |
70 |
1.000 |
Domainoid score |
I9390 |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
1 |
1.000 |
- |
- |
|
|
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
1 |
1.050 |
131 |
1.000 |
Inparanoid score |
I4499 |
OMA |
1 |
1.010 |
- |
- |
|
QHG45847 |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1604809at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000228 |
OrthoInspector |
1 |
1.000 |
- |
- |
|
otm48970 |
Panther |
1 |
1.100 |
- |
- |
LDO |
PTHR46109 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
1 |
1.030 |
- |
avgDist |
Average_Evolutionary_Distance |
R4631 |
SonicParanoid |
1 |
1.000 |
- |
- |
|
X1972 |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
11 | 11.110 |
|
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