Protein Alignment lin-28 and Lin28a

DIOPT Version :9

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: NP_001102739.1
• Gene: Lin28a / 500562
• RGDID: 1566408
• Length: 209
• Species: Rattus norvegicus
• Alignment Length: 190
• Identity: 75/190 - (39%)
• Similarity: 102/190 - (53%)
• Gaps: 16/190 - (8%)

  Fly     1 MENVQLENGLERRTTSQSSTSSANPANLASPTEECGCVR-LGKCKWFNVAKGWGFLTPN------ 58
            :.|.|...|..:  .::.:...| ||:.|...:|...:. .|.||||||..|:|||:..
  Rat     4 VSNQQFAGGCAK--AAEKAPEEA-PADAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVA 65

  Fly    59 -DGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPR----I 118
             |...:||||||.:.|.|||||.|.|.|||..:::::|||:.||:...|..|.||..||:    .
  Rat    66 LDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKSMQ 130

  Fly   119 NRRTRRMRCYNCGEFANHIASECALGPQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSI 178
            .||::..||||||...:| |.||.|.||||:||.|:...|:.|.||.|......|..|.:
  Rat   131 KRRSKGDRCYNCGGLDHH-AKECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSSQGKPV 189

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	32/66 (48%)
Lin28a	NP_001102739.1	CSD	42..112	CDD:278729	34/69 (49%)
		AIR1	<120..>183	CDD:227414	28/63 (44%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166345364
Domainoid	1	1.000	66	1.000	Domainoid score	I9700
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	123	1.000	Inparanoid score	I4638
OMA	1	1.010	-	-		QHG45847
OrthoDB	1	1.010	-	-		D1604809at2759
OrthoFinder	1	1.000	-	-		FOG0000228
OrthoInspector	1	1.000	-	-		otm45883
orthoMCL	1	0.900	-	-		OOG6_105612
Panther	1	1.100	-	-	LDO	PTHR46109
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1972
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	13	12.910