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Protein Alignment lin-28 and Ybx1
DIOPT Version :9
Sequence 1: | NP_647983.1 |
Gene: | lin-28 / 38639 |
FlyBaseID: | FBgn0035626 |
Length: | 195 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_008762280.1 |
Gene: | Ybx1 / 500538 |
RGDID: | 61843 |
Length: | 326 |
Species: | Rattus norvegicus |
Alignment Length: | 182 |
Identity: | 56/182 - (30%) |
Similarity: | 75/182 - (41%) |
Gaps: | 44/182 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 18 SSTSSANPANLASPTEECGCVR------LGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSG- 75
|...|..|..|.|.....|..: ||..|||||..|:||:..||..::|||||:.|:.:.
Rat 30 SGAGSGGPGGLTSAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 94
Fly 76 ---FRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHI 137
.||:|:.|.|||:.....:|.||..|:...|...|||.|....|...|
Rat 95 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR-------------- 145
Fly 138 ASECALGPQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQE 189
.|:| || |.:|..|::.||:|...|..|.:|.|
Rat 146 --------YPRR----RG--------PPRNYQQNYQNSESGEKNEGSESAPE 177
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
lin-28 | NP_647983.1 |
CSP_CDS |
41..101 |
CDD:239905 |
27/63 (43%) |
Ybx1 | XP_008762280.1 |
CSD |
57..126 |
CDD:278729 |
29/68 (43%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
1 |
0.930 |
- |
- |
|
C166345362 |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1278 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000228 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
5 | 4.740 |
|
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