DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment lin-28 and zcchc9

DIOPT Version :9

Sequence 1:	NP_647983.1	Gene:	lin-28 / 38639	FlyBaseID:	FBgn0035626	Length:	195	Species:	Drosophila melanogaster
Sequence 2:	NP_001011465.1	Gene:	zcchc9 / 496956	XenbaseID:	XB-GENE-972766	Length:	246	Species:	Xenopus tropicalis

Alignment Length:	233	Identity:	50/233 - (21%)
Similarity:	71/233 - (30%)	Gaps:	79/233 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly    29 ASPTEECGCVRLGK-CKWFNVAKGWGFLTP-----NDGG-------------------QEVFVHQ 68
            |.|......||..| |    .|..||.|..     .:||                   ::|:|:|
Frog     5 ARPGTSSAAVRNRKVC----AASPWGELQQQQRPHGEGGAGKRKAPVPQPPPNNKKKKKDVYVNQ 65

  Fly    69 SV-------IQMSGFRSLGEQEEVE----------------FECQRTSRGL----EATRVSSRHG 106
            .|       .::.|..|..:::..|                |.|::...|:    |..|......
Frog    66 DVNGFGQYQAELGGVESPRKEQRREDRRLKRQTHKKDRMICFHCRKPGHGMADCAEVLRCQESGT 130

  Fly   107 GSC--QGSTYRPRINRRTR---------RMRCYNCGEFANHIASECALGP-----QPKRCHRCRG 155
            |.|  .|||.......|.:         ..:|:.|||. .|::..|...|     :...|..|..
Frog   131 GICFRCGSTEHELTKCRAKVDPALGEFPFAKCFICGEM-GHLSRSCPDNPKGLYAEGGSCRICGS 194

  Fly   156 EDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQEKSEE 193
            .:|...|||      .|.||..|:....|.......||
Frog   195 VEHFQRDCP------QHQNSAQITVKRWSKGMSADYEE 226

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	19/111 (17%)
zcchc9	NP_001011465.1	PTZ00368	<106..203	CDD:173561	22/97 (23%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910