Protein Alignment lin-28 and lin28ab

DIOPT Version :9

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: XP_005159592.1
• Gene: lin28ab / 394066
• ZFINID: ZDB-GENE-040426-747
• Length: 207
• Species: Danio rerio
• Alignment Length: 177
• Identity: 74/177 - (41%)
• Similarity: 99/177 - (55%)
• Gaps: 15/177 - (8%)

  Fly    29 ASPTEECGCVR-LGKCKWFNVAKGWGFLTPN-------DGGQEVFVHQSVIQMSGFRSLGEQEEV 85
            ||..|:.|... .|.||||||..|:|||:..       |...:||||||.:.|.|||||.|.|.|
Zfish    28 ASSEEDSGSFHGSGVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAV 92

  Fly    86 EFECQRTSRGLEATRVSSRHGGSCQGSTYRPR--INRRTRRMRCYNCGEFANHIASECALGPQPK 148
            ||..:|:|:|||:.:|:...|..|.||..:|:  ..||::..||:|||. .||.|.||.|.||||
Zfish    93 EFTFKRSSKGLESLQVTGPGGAPCVGSEKKPKGTQKRRSKGDRCFNCGG-PNHHAKECQLPPQPK 156

  Fly   149 RCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSSAAQEKSEEAT 195
            :||.|:...|:.|:||.|    :...|......|::|..:|:....|
Zfish   157 KCHFCQSISHMVANCPIK----AQQLSPGSQGKSTTSTGEEEDMSHT 199

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	34/66 (52%)
lin28ab	XP_005159592.1	CSP_CDS	41..110	CDD:239905	35/68 (51%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170586408
Domainoid	1	1.000	70	1.000	Domainoid score	I9487
eggNOG	1	0.900	-	-		E1_COG1278
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	140	1.000	Inparanoid score	I4481
OMA	1	1.010	-	-		QHG45847
OrthoDB	1	1.010	-	-		D1604809at2759
OrthoFinder	1	1.000	-	-		FOG0000228
OrthoInspector	1	1.000	-	-		otm25032
orthoMCL	1	0.900	-	-		OOG6_105612
Panther	1	1.100	-	-	LDO	PTHR46109
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4631
SonicParanoid	1	1.000	-	-		X1972
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	16	15.800