Protein Alignment lin-28 and yps

DIOPT Version :10

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: NP_524033.2
• Gene: yps / 39377
• FlyBaseID: FBgn0022959
• Length: 352
• Species: Drosophila melanogaster
• Alignment Length: 209
• Identity: 52/209 - (24%)
• Similarity: 77/209 - (36%)
• Gaps: 67/209 - (32%)

  Fly    11 ERRTTSQSSTSSANPAN--------------------LASPTEECGCVRL-GKCKWFNVAKGWGF 54
            |::...|......||.|                    .|.||:|....:: |..|||||..|:||
  Fly    13 EQQQAQQQPEQQQNPPNPQEQDHEQEPLDELQGQQGQPAPPTKEVIATKVTGTVKWFNVKSGYGF 77

  Fly    55 LTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYR 115
            :..||..::||||||.|..:    ..||:|:.|.|||:.....:|.||..|:...|...:||.:.
  Fly    78 INRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFA 142

  Fly   116 PRINRRTRRMRCYNCGEFANHIASECALGPQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISN 180
            ....|..|                     |..|:..|..||                     :..
  Fly   143 ADKRRNFR---------------------PWMKKNRRKDGE---------------------VEG 165

  Fly   181 NSSSSAAQEKSEEA 194
            ..:.|:||::.::|
  Fly   166 EDAESSAQQQQQQA 179

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	28/63 (44%)
yps	NP_524033.2	CSD	62..131	CDD:278729	29/68 (43%)