Sequence 1: | NP_647983.1 | Gene: | lin-28 / 38639 | FlyBaseID: | FBgn0035626 | Length: | 195 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_011241482.1 | Gene: | Lin28b / 380669 | MGIID: | 3584032 | Length: | 303 | Species: | Mus musculus |
Alignment Length: | 224 | Identity: | 78/224 - (34%) |
---|---|---|---|
Similarity: | 107/224 - (47%) | Gaps: | 48/224 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 RTTSQSSTSSANPANLASPTEECGCVR--------LGKCKWFNVAKGWGFLT-------PNDGGQ 62
Fly 63 EVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRPR---------- 117
Fly 118 ----------------INRRTRRM--RCYNCGEFANHIASECALGPQPKRCHRCRGEDHLHADCP 164
Fly 165 HKNVTQ----SHSNSKSISNNSSSSAAQE 189 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
lin-28 | NP_647983.1 | CSP_CDS | 41..101 | CDD:239905 | 32/66 (48%) |
Lin28b | XP_011241482.1 | CSP_CDS | 61..131 | CDD:239905 | 34/69 (49%) |
PTZ00368 | <183..219 | CDD:173561 | 19/36 (53%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C167841969 | |
Domainoid | 1 | 1.000 | 66 | 1.000 | Domainoid score | I9890 |
eggNOG | 1 | 0.900 | - | - | E1_COG1278 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H47607 | |
Inparanoid | 1 | 1.050 | 129 | 1.000 | Inparanoid score | I4631 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1604809at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000228 | |
OrthoInspector | 1 | 1.000 | - | - | otm43801 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_105612 | |
Panther | 1 | 1.100 | - | - | O | PTHR46109 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R4631 |
SonicParanoid | 1 | 1.000 | - | - | X1972 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
15 | 14.790 |