DRSC/TRiP Functional Genomics Resources

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Protein Alignment lin-28 and Zcchc13

DIOPT Version :10

Sequence 1:NP_647983.1 Gene:lin-28 / 38639 FlyBaseID:FBgn0035626 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001388052.1 Gene:Zcchc13 / 302399 RGDID:1589760 Length:170 Species:Rattus norvegicus


Alignment Length:77 Identity:21/77 - (27%)
Similarity:32/77 - (41%) Gaps:3/77 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 FECQRTSRGLEATRVSSRHGGSCQGSTYRPRINRRTRRMRCYNCGEFANHIASECALGPQPKRCH 151
            |:|.|:.............|.:.:|.|..|:.:..::...||.||| ..|.|.:|.|  ....|:
  Rat     7 FKCGRSGHWARECPKGGTRGRTTRGRTRGPQCSSASQSDVCYRCGE-TGHYAKDCDL--LQDTCY 68

  Fly   152 RCRGEDHLHADC 163
            .|....|:..||
  Rat    69 NCGRRGHIAKDC 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lin-28NP_647983.1 CSP_CDS 41..101 CDD:239905 3/13 (23%)
Zcchc13NP_001388052.1 PTZ00368 46..167 CDD:173561 14/38 (37%)

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