DRSC/TRiP Functional Genomics Resources

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Protein Alignment lin-28 and CSDC2

DIOPT Version :10

Sequence 1:NP_647983.1 Gene:lin-28 / 38639 FlyBaseID:FBgn0035626 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_055275.1 Gene:CSDC2 / 27254 HGNCID:30359 Length:153 Species:Homo sapiens


Alignment Length:75 Identity:26/75 - (34%)
Similarity:40/75 - (53%) Gaps:17/75 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 RRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGF 76
            :||.:.|:|:.|:          .|.|..|.||.|:.::|.||:||.:|.:::|||.|.|:    
Human    52 KRTRTYSATARAS----------AGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIE---- 102

  Fly    77 RSLGEQEEVE 86
               ||...||
Human   103 ---GEYVPVE 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lin-28NP_647983.1 CSP_CDS 41..101 CDD:239905 19/46 (41%)
CSDC2NP_055275.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..62 4/9 (44%)
CSP_CDS 70..134 CDD:239905 19/47 (40%)

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