Protein Alignment lin-28 and Csdc2

DIOPT Version :9

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: NP_001164013.1
• Gene: Csdc2 / 266600
• RGDID: 628780
• Length: 154
• Species: Rattus norvegicus
• Alignment Length: 75
• Identity: 26/75 - (34%)
• Similarity: 40/75 - (53%)
• Gaps: 17/75 - (22%)

  Fly    12 RRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGF 76
            :||.:.|:|:.|:          .|.|..|.||.|:.::|.||:||.:|.:::|||.|.|:
  Rat    53 KRTRTYSATARAS----------AGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIE---- 103

  Fly    77 RSLGEQEEVE 86
               ||...||
  Rat   104 ---GEYVPVE 110

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	19/46 (41%)
Csdc2	NP_001164013.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	1..22
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	36..62		3/8 (38%)
		CSP_CDS	71..135	CDD:239905	19/47 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG1278
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810