Protein Alignment lin-28 and lin-28

DIOPT Version :9

• Sequence 1: NP_647983.1
• Gene: lin-28 / 38639
• FlyBaseID: FBgn0035626
• Length: 195
• Species: Drosophila melanogaster
• Sequence 2: NP_001021085.1
• Gene: lin-28 / 172626
• WormBaseID: WBGene00003014
• Length: 227
• Species: Caenorhabditis elegans
• Alignment Length: 196
• Identity: 67/196 - (34%)
• Similarity: 99/196 - (50%)
• Gaps: 13/196 - (6%)

  Fly     5 QLENGLERRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQS 69
            :|.:.::.|.|......|..  .|.|||..    ..|.||||||:||:||:..:..|:::|||||
 Worm    25 RLPDVVDNRLTENMRVPSFE--RLPSPTPR----YFGSCKWFNVSKGYGFVIDDITGEDLFVHQS 83

  Fly    70 VIQMSGFRSLGEQEEVEFECQRTS--RGLEATRVSSR-HGGSCQGSTYRPRINRRTRRMRCYNCG 131
            .:.|.|||||.|.|.|.:..|..|  :|.||..||.. .|...:||...|...::...:||:.||
 Worm    84 NLNMQGFRSLDEGERVSYYIQERSNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG 148

  Fly   132 EFANHIASECA-LGPQPKRCHRCRGEDHLHADCPHKNVTQSHSNSKSISNNSSSS-AAQEKSEEA 194
            :||.|.|..|. :....|.|:.|..|:|:.:.||.:.  :.|...:..:..:.:: .|.|||...
 Worm   149 KFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERR--RKHRPEQVAAEEAEAARMAAEKSSPT 211

  Fly   195 T 195
            |
 Worm   212 T 212

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
lin-28	NP_647983.1	CSP_CDS	41..101	CDD:239905	31/61 (51%)
lin-28	NP_001021085.1	CSD	55..119	CDD:278729	30/65 (46%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	67	1.000	Domainoid score	I6452
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	106	1.000	Inparanoid score	I3509
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1604809at2759
OrthoFinder	1	1.000	-	-		FOG0000228
OrthoInspector	1	1.000	-	-		oto20405
orthoMCL	1	0.900	-	-		OOG6_105612
Panther	1	1.100	-	-	LDO	PTHR46109
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R4631
SonicParanoid	1	1.000	-	-		X1972
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	12	12.000