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Protein Alignment lin-28 and cey-3
DIOPT Version :9
Sequence 1: | NP_647983.1 |
Gene: | lin-28 / 38639 |
FlyBaseID: | FBgn0035626 |
Length: | 195 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001367859.1 |
Gene: | cey-3 / 172211 |
WormBaseID: | WBGene00000474 |
Length: | 265 |
Species: | Caenorhabditis elegans |
Alignment Length: | 172 |
Identity: | 48/172 - (27%) |
Similarity: | 79/172 - (45%) |
Gaps: | 29/172 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSG-----FRSLGEQEEVEFECQRTSRGLEATR 100
||.||::|.:.:||::.:||.::|||||:.|..|. .|:|.::|||.|:......|.||..
Worm 66 GKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFDLVDGKNGPEAAN 130
Fly 101 VSSRHGGSCQGSTYRPRINRRTRRMR--------CYNCGEFANHIASECALGPQPKRCHRCRGED 157
|:...|.:..||.||.::..|.|:.| .::..| ...:....|:..:.|:..:.|
Worm 131 VTGPAGVNVSGSKYRHQLLSRFRKNRKPKIVVGEDFDSKE-TEKLVEAPAVAMEKKKQRKQR--- 191
Fly 158 HLHADCPHKNVTQSHSNSKSISNNSSSSAAQE----KSEEAT 195
||..:...:.|...:.:.|||..| .||.|:
Worm 192 --------KNKNRKQKDQKGAGDAADSSATTESLGTSSETAS 225
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
lin-28 | NP_647983.1 |
CSP_CDS |
41..101 |
CDD:239905 |
25/64 (39%) |
cey-3 | NP_001367859.1 |
CSD |
64..134 |
CDD:278729 |
26/67 (39%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
1 |
0.930 |
- |
- |
|
C160162209 |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1278 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1604809at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000228 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
6 | 5.750 |
|
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