DRSC/TRiP Functional Genomics Resources

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Protein Alignment lin-28 and Cnbp

DIOPT Version :10

Sequence 1:NP_647983.1 Gene:lin-28 / 38639 FlyBaseID:FBgn0035626 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_038521.1 Gene:Cnbp / 12785 MGIID:88431 Length:178 Species:Mus musculus


Alignment Length:52 Identity:20/52 - (38%)
Similarity:26/52 - (50%) Gaps:9/52 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 CYNCGEFANHIASECALGPQPKR-----CHRCRGEDHLHADCPHKNVTQSHS 173
            |||||. ..|||.:|   .:|||     |:.|....||..||.|.:..:.:|
Mouse    75 CYNCGR-GGHIAKDC---KEPKREREQCCYNCGKPGHLARDCDHADEQKCYS 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lin-28NP_647983.1 CSP_CDS 41..101 CDD:239905
CnbpNP_038521.1 RNA-binding Arg/Gly-rich region (RGG-box). /evidence=ECO:0000250|UniProtKB:P62633 25..38
PTZ00368 54..172 CDD:173561 20/52 (38%)
Blue background indicates that the domain is not in the aligned region.

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