DRSC/TRiP Functional Genomics Resources

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Protein Alignment lin-28 and Csdc2

DIOPT Version :9

Sequence 1:NP_647983.1 Gene:lin-28 / 38639 FlyBaseID:FBgn0035626 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_663448.2 Gene:Csdc2 / 105859 MGIID:2146027 Length:154 Species:Mus musculus


Alignment Length:75 Identity:26/75 - (34%)
Similarity:40/75 - (53%) Gaps:17/75 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 RRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGF 76
            :||.:.|:|:.|:          .|.|..|.||.|:.::|.||:||.:|.:::|||.|.|:    
Mouse    53 KRTRTYSATARAS----------AGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIE---- 103

  Fly    77 RSLGEQEEVE 86
               ||...||
Mouse   104 ---GEYVPVE 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lin-28NP_647983.1 CSP_CDS 41..101 CDD:239905 19/46 (41%)
Csdc2NP_663448.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 38..62 3/8 (38%)
CSP_CDS 71..135 CDD:239905 19/47 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1278
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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