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Protein Alignment lin-28 and ybx2
DIOPT Version :9
Sequence 1: | NP_647983.1 |
Gene: | lin-28 / 38639 |
FlyBaseID: | FBgn0035626 |
Length: | 195 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001123667.1 |
Gene: | ybx2 / 100170415 |
XenbaseID: | XB-GENE-5798907 |
Length: | 337 |
Species: | Xenopus tropicalis |
Alignment Length: | 154 |
Identity: | 48/154 - (31%) |
Similarity: | 72/154 - (46%) |
Gaps: | 22/154 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 12 RRTTSQSSTSSANPANLASPTEECGCVRLGKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSG- 75
::.|..::.:..|...||:..: |..|||||..|:||:..||..::|||||:.|:.:.
Frog 22 QKPTISAARNQPNKKVLATQVQ-------GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNP 79
Fly 76 ---FRSLGEQEEVEFECQRTSRGLEATRVSSRHGGSCQGSTYRP---RINRRTRRMRCYNCGEFA 134
.||:|:.|.|||:.....:|.||..|:...|...:||.:.| |..||..|.|....||..
Frog 80 RKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFAPNRRRFRRRFYRPRADTAGESG 144
Fly 135 NHIASECALGPQPKRCHRC-RGED 157
.. |..|::.... |||:
Frog 145 GE-------GVSPEQMSEGERGEE 161
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
lin-28 | NP_647983.1 |
CSP_CDS |
41..101 |
CDD:239905 |
27/63 (43%) |
ybx2 | NP_001123667.1 |
CSD |
42..111 |
CDD:278729 |
28/75 (37%) |
PRK07764 |
<193..336 |
CDD:236090 |
|
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000228 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 2.000 |
|
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