DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and Prdm4

DIOPT Version :10

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:NP_857633.2 Gene:Prdm4 / 72843 MGIID:1920093 Length:803 Species:Mus musculus


Alignment Length:955 Identity:198/955 - (20%)
Similarity:303/955 - (31%) Gaps:354/955 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 GEDGKPRYS-MPAPEIP---PDV--AVSHITYVMGLHLPVGAGNGPANGSVAG--SVSGATPPPP 351
            |....|.:| :|||.:|   |::  ::|.:...:.|.||||.|:   .|.:.|  ..:...||||
Mouse    31 GLAASPSHSAIPAPGLPVAIPNLGPSLSSLPSALSLMLPVGIGD---RGVMCGLPERNYTLPPPP 92

  Fly   352 TATPCCRRSSPPAHVSTTTSTCNAHHPHIQHGRHASVIIG-----QDRSP-------MASSDKDT 404
                                     :||::.....:::.|     .||.|       ..:.|.:|
Mouse    93 -------------------------YPHLESSYFRTILPGILSYLADRPPPQYIHPNSINVDGNT 132

  Fly   405 A----GSPLSGLDHQMTPQDGSV-----------RSVRSD--EGYHSNECHE------------- 439
            |    .:| |.||....  :|:|           |||.:.  :..|.|:.||             
Mouse   133 ALSITNNP-SALDPYQA--NGNVGLELGIVSIDSRSVNTHGAQSLHPNDGHEVALDTTITMENVS 194

  Fly   440 -----------------DGLT--PPEDSSDSESEHNYVLDCSKKAIAPKETV----IAQAQKPSS 481
                             ||:|  .|:..:.|.|.....:|....::. .|.|    :........
Mouse   195 RVTSPISTDGMAEELTMDGVTGEHPQIPNGSRSHEPLSVDSVSNSLT-AEAVGHGGVIPIHGNGL 258

  Fly   482 SPPAVVMANTTTNSMISHSSPTATPICETDKNEYRKFKVKMPLKYEFKNKTCVKQEPSLKEVDQE 546
            ..|.|:..:...|.:...|..|.:....|.........|.:...:...:...|    ||.||.  
Mouse   259 ELPVVMETDHIANRVNGMSDSTLSDSIHTVAMSTNSVSVALSTSHNLASLESV----SLHEVG-- 317

  Fly   547 MSLPQEEEEDQVMHPEPDSICPST-TTHLGDEHMLMMERERERERERIQEREPSNQQPASSTVIV 610
            :||            ||.::...| ...:|..|:.:...........:|..:.::.:...:|:..
Mouse   318 LSL------------EPVAVSSITQEVAMGTGHVDVSSDSLSFVPSSLQMEDSNSNKENMATLFT 370

  Fly   611 L--------------EHNSGGQARTIVPLSKPYYEPDPPGERYMRFGQPSSSIL----------- 650
            :              :|.         |::   :.||.|.|...|...|...:|           
Mouse   371 IWCTLCDRAYPSDCPDHG---------PVT---FVPDTPIESRARLSLPKQLVLRQSIVGTDVVG 423

  Fly   651 ----------ETI--------LTSQ--HRLEAA-------------------------------- 663
                      |||        |..|  |.||.|                                
Mouse   424 VLPLIGVWTAETIPVRTCFGPLIGQQSHSLEVAEWTDKAVNHVWKIYHTGVLEFCIITTDENECN 488

  Fly   664 -----AAAANACRQANAATP-------------PPTSPTEMAYSYKKSQRYGNAVSPD-SSSNLG 709
                 ..|.|...|...|.|             ||.|.....||...:|:.|....|| ...|.|
Mouse   489 WMMFVRKARNREEQNLVAYPHDGKIYFCTSQDIPPESELLFYYSRNYAQQIGVPEHPDVHLCNCG 553

  Fly   710 QNPEQLSSSAVVVGEQEMTRATMIKGECSPPPPSHHHHNVIFSPSRHAAYLGAGEAGGHSPSPGY 774
            :                         |||             |.|...|:| ......|.||.|:
Mouse   554 K-------------------------ECS-------------SYSEFKAHL-TSHIHNHLPSQGH 579

  Fly   775 PGYPHYGAAATSTFHSPPHSSHSPFDRQSNASSGAGSATNLHLLQTSTQMLNHPLMQPLTPLQRL 839
                       |:.|.|.||....: :.|.......|.:.||:     ..:.|..|:|       
Mouse   580 -----------SSSHGPSHSKERKW-KCSMCPQAFISPSKLHV-----HFMGHMGMKP------- 620

  Fly   840 SPLRISPPSSLSPDGNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSN 904
                                                              ::|:.|.|.|...||
Mouse   621 --------------------------------------------------HKCDFCSKAFSDPSN 635

  Fly   905 LKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHS 969
            |:.||:.|:|::.::|.:|.|||||.|||:.|.::|||||..:||.|.|.|....:||.|:.:|:
Mouse   636 LRTHLKIHTGQKNYRCTLCDKSFTQKAHLESHMVIHTGEKNLKCDYCDKLFMRRQDLKQHVLIHT 700

  Fly   970 GQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEE 1034
            .::...|..|.:.|.:..|||.|...|...|.|||:.|.|.|::...|..|.||  ||     |.
Mouse   701 QERQIKCPKCDKLFLRTNHLKKHLNSHEGKRDYVCEKCTKAYLTKYHLTRHLKT--CK-----EP 758

  Fly  1035 LAMAAAATSECLDKDHPEPDSREAYEQLTQHMHPAVHPGLRHLSS 1079
            .:.::|...|  |.:..|.|..::.......|..||:.....||:
Mouse   759 SSSSSAQEEE--DDESEEEDLADSMRTEDCRMGSAVYSTDESLSA 801

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 PR-SET_PRDM1 120..262 CDD:380964
zf-C2HE <871..912 CDD:465082 9/40 (23%)
C2H2 Zn finger 892..912 CDD:275368 9/19 (47%)
zf-H2C2_2 904..929 CDD:463886 11/24 (46%)
C2H2 Zn finger 920..940 CDD:275368 11/19 (58%)
SFP1 <938..1020 CDD:227516 30/81 (37%)
C2H2 Zn finger 948..968 CDD:275368 8/19 (42%)
C2H2 Zn finger 976..996 CDD:275368 7/19 (37%)
C2H2 Zn finger 1004..1023 CDD:275368 6/18 (33%)
Prdm4NP_857633.2 zf_PR_Knuckle 361..398 CDD:375871 5/48 (10%)
PR-SET_PRDM4 401..540 CDD:380966 23/138 (17%)
C2H2 Zn finger 550..569 CDD:275368 9/57 (16%)
C2H2 Zn finger 595..615 CDD:275368 4/24 (17%)
zf-H2C2_2 611..631 CDD:463886 6/76 (8%)
C2H2 Zn finger 623..643 CDD:275368 9/19 (47%)
zf-H2C2_2 635..660 CDD:463886 11/24 (46%)
C2H2 Zn finger 651..671 CDD:275368 11/19 (58%)
zf-H2C2_2 663..686 CDD:463886 12/22 (55%)
C2H2 Zn finger 679..699 CDD:275368 8/19 (42%)
zf-H2C2_2 691..716 CDD:463886 7/24 (29%)
C2H2 Zn finger 707..727 CDD:275368 7/19 (37%)
C2H2 Zn finger 735..754 CDD:275368 6/18 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 757..803 11/47 (23%)
Blue background indicates that the domain is not in the aligned region.

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