DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and Prdm4

DIOPT Version :9

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:NP_857633.2 Gene:Prdm4 / 72843 MGIID:1920093 Length:803 Species:Mus musculus


Alignment Length:955 Identity:198/955 - (20%)
Similarity:303/955 - (31%) Gaps:354/955 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   295 GEDGKPRYS-MPAPEIP---PDV--AVSHITYVMGLHLPVGAGNGPANGSVAG--SVSGATPPPP 351
            |....|.:| :|||.:|   |::  ::|.:...:.|.||||.|:   .|.:.|  ..:...||||
Mouse    31 GLAASPSHSAIPAPGLPVAIPNLGPSLSSLPSALSLMLPVGIGD---RGVMCGLPERNYTLPPPP 92

  Fly   352 TATPCCRRSSPPAHVSTTTSTCNAHHPHIQHGRHASVIIG-----QDRSP-------MASSDKDT 404
                                     :||::.....:::.|     .||.|       ..:.|.:|
Mouse    93 -------------------------YPHLESSYFRTILPGILSYLADRPPPQYIHPNSINVDGNT 132

  Fly   405 A----GSPLSGLDHQMTPQDGSV-----------RSVRSD--EGYHSNECHE------------- 439
            |    .:| |.||....  :|:|           |||.:.  :..|.|:.||             
Mouse   133 ALSITNNP-SALDPYQA--NGNVGLELGIVSIDSRSVNTHGAQSLHPNDGHEVALDTTITMENVS 194

  Fly   440 -----------------DGLT--PPEDSSDSESEHNYVLDCSKKAIAPKETV----IAQAQKPSS 481
                             ||:|  .|:..:.|.|.....:|....::. .|.|    :........
Mouse   195 RVTSPISTDGMAEELTMDGVTGEHPQIPNGSRSHEPLSVDSVSNSLT-AEAVGHGGVIPIHGNGL 258

  Fly   482 SPPAVVMANTTTNSMISHSSPTATPICETDKNEYRKFKVKMPLKYEFKNKTCVKQEPSLKEVDQE 546
            ..|.|:..:...|.:...|..|.:....|.........|.:...:...:...|    ||.||.  
Mouse   259 ELPVVMETDHIANRVNGMSDSTLSDSIHTVAMSTNSVSVALSTSHNLASLESV----SLHEVG-- 317

  Fly   547 MSLPQEEEEDQVMHPEPDSICPST-TTHLGDEHMLMMERERERERERIQEREPSNQQPASSTVIV 610
            :||            ||.::...| ...:|..|:.:...........:|..:.::.:...:|:..
Mouse   318 LSL------------EPVAVSSITQEVAMGTGHVDVSSDSLSFVPSSLQMEDSNSNKENMATLFT 370

  Fly   611 L--------------EHNSGGQARTIVPLSKPYYEPDPPGERYMRFGQPSSSIL----------- 650
            :              :|.         |::   :.||.|.|...|...|...:|           
Mouse   371 IWCTLCDRAYPSDCPDHG---------PVT---FVPDTPIESRARLSLPKQLVLRQSIVGTDVVG 423

  Fly   651 ----------ETI--------LTSQ--HRLEAA-------------------------------- 663
                      |||        |..|  |.||.|                                
Mouse   424 VLPLIGVWTAETIPVRTCFGPLIGQQSHSLEVAEWTDKAVNHVWKIYHTGVLEFCIITTDENECN 488

  Fly   664 -----AAAANACRQANAATP-------------PPTSPTEMAYSYKKSQRYGNAVSPD-SSSNLG 709
                 ..|.|...|...|.|             ||.|.....||...:|:.|....|| ...|.|
Mouse   489 WMMFVRKARNREEQNLVAYPHDGKIYFCTSQDIPPESELLFYYSRNYAQQIGVPEHPDVHLCNCG 553

  Fly   710 QNPEQLSSSAVVVGEQEMTRATMIKGECSPPPPSHHHHNVIFSPSRHAAYLGAGEAGGHSPSPGY 774
            :                         |||             |.|...|:| ......|.||.|:
Mouse   554 K-------------------------ECS-------------SYSEFKAHL-TSHIHNHLPSQGH 579

  Fly   775 PGYPHYGAAATSTFHSPPHSSHSPFDRQSNASSGAGSATNLHLLQTSTQMLNHPLMQPLTPLQRL 839
                       |:.|.|.||....: :.|.......|.:.||:     ..:.|..|:|       
Mouse   580 -----------SSSHGPSHSKERKW-KCSMCPQAFISPSKLHV-----HFMGHMGMKP------- 620

  Fly   840 SPLRISPPSSLSPDGNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSN 904
                                                              ::|:.|.|.|...||
Mouse   621 --------------------------------------------------HKCDFCSKAFSDPSN 635

  Fly   905 LKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHS 969
            |:.||:.|:|::.::|.:|.|||||.|||:.|.::|||||..:||.|.|.|....:||.|:.:|:
Mouse   636 LRTHLKIHTGQKNYRCTLCDKSFTQKAHLESHMVIHTGEKNLKCDYCDKLFMRRQDLKQHVLIHT 700

  Fly   970 GQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEE 1034
            .::...|..|.:.|.:..|||.|...|...|.|||:.|.|.|::...|..|.||  ||     |.
Mouse   701 QERQIKCPKCDKLFLRTNHLKKHLNSHEGKRDYVCEKCTKAYLTKYHLTRHLKT--CK-----EP 758

  Fly  1035 LAMAAAATSECLDKDHPEPDSREAYEQLTQHMHPAVHPGLRHLSS 1079
            .:.::|...|  |.:..|.|..::.......|..||:.....||:
Mouse   759 SSSSSAQEEE--DDESEEEDLADSMRTEDCRMGSAVYSTDESLSA 801

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 SET 133..260 CDD:214614
C2H2 Zn finger 892..912 CDD:275368 9/19 (47%)
zf-H2C2_2 904..929 CDD:290200 11/24 (46%)
C2H2 Zn finger 920..940 CDD:275368 11/19 (58%)
zf-H2C2_2 932..957 CDD:290200 13/24 (54%)
C2H2 Zn finger 948..968 CDD:275368 8/19 (42%)
zf-H2C2_2 960..985 CDD:290200 7/24 (29%)
C2H2 Zn finger 976..996 CDD:275368 7/19 (37%)
C2H2 Zn finger 1004..1023 CDD:275368 6/18 (33%)
Prdm4NP_857633.2 zf_PR_Knuckle 361..398 CDD:375871 5/48 (10%)
PR-SET_PRDM4 401..540 CDD:380966 23/138 (17%)
C2H2 Zn finger 550..569 CDD:275368 9/57 (16%)
C2H2 Zn finger 595..615 CDD:275368 4/24 (17%)
zf-C2H2 621..643 CDD:333835 9/21 (43%)
C2H2 Zn finger 623..643 CDD:275368 9/19 (47%)
zf-H2C2_2 635..660 CDD:372612 11/24 (46%)
C2H2 Zn finger 651..671 CDD:275368 11/19 (58%)
zf-H2C2_2 663..686 CDD:372612 12/22 (55%)
C2H2 Zn finger 679..699 CDD:275368 8/19 (42%)
zf-H2C2_2 691..716 CDD:372612 7/24 (29%)
C2H2 Zn finger 707..727 CDD:275368 7/19 (37%)
C2H2 Zn finger 735..754 CDD:275368 6/18 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 757..803 11/47 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2461
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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