DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and prdm12b

DIOPT Version :10

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:XP_073806363.1 Gene:prdm12b / 492816 ZFINID:ZDB-GENE-041114-172 Length:483 Species:Danio rerio


Alignment Length:127 Identity:47/127 - (37%)
Similarity:66/127 - (51%) Gaps:17/127 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   947 QCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKY 1011
            :|.||.:.|:|.|||::|:|:|:..||:.|..|.::|:|...|:.|.||||.:|||.|..|...|
Zfish   365 RCVICHRGFNSRSNLRSHMRIHTLDKPFVCRFCNRRFSQSSTLRNHVRLHTGERPYKCHVCQSAY 429

  Fly  1012 ISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDHPEPDSREAYEQLTQHMHPA--VH 1071
            ...:|||.|.|:...:|.|....:.:.|          |..|.     .||.|..|||  ||
Zfish   430 SQLAGLRAHQKSARHRPANTGAVVGLQA----------HSPPP-----PQLAQVPHPASLVH 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 PR-SET_PRDM1 120..262 CDD:380964
zf-C2HE <871..912 CDD:465082
C2H2 Zn finger 892..912 CDD:275368
zf-H2C2_2 904..929 CDD:463886
C2H2 Zn finger 920..940 CDD:275368
SFP1 <938..1020 CDD:227516 32/72 (44%)
C2H2 Zn finger 948..968 CDD:275368 10/19 (53%)
C2H2 Zn finger 976..996 CDD:275368 7/19 (37%)
C2H2 Zn finger 1004..1023 CDD:275368 7/18 (39%)
prdm12bXP_073806363.1 None
Blue background indicates that the domain is not in the aligned region.

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