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Protein Alignment Blimp-1 and prdm9

DIOPT Version :9

Sequence 1:	NP_001261442.1	Gene:	Blimp-1 / 38638	FlyBaseID:	FBgn0035625	Length:	1216	Species:	Drosophila melanogaster
Sequence 2:	NP_957196.1	Gene:	prdm9 / 393876	ZFINID:	ZDB-GENE-040426-1319	Length:	853	Species:	Danio rerio

Alignment Length:	1005	Identity:	229/1005 - (22%)
Similarity:	327/1005 - (32%)	Gaps:	331/1005 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly   107 DVQAERGLPNRADKTLPRSLTL-KSSMVYSTPNVKTEGVWSSG-VIPRGTRFGPFEGIPTSNYPN 169
            |..|..|.|.||..|||:.|.: :||:.::     ..||::.| .:|.|..||||:|...|
Zfish    66 DSPAALGTPQRALLTLPQGLVIGRSSISHA-----GLGVFNQGQTVPLGMHFGPFDGEEIS---- 121

  Fly   170 DKNKA---RYFWRVQGTRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLSVMNLVACQ 231
             :.||   ...|      .|..||      :.|.|:|....:.||||::|..:.|.:..||||.|
Zfish   122 -EEKALDSANSW------VICRGN------NQYSYIDAEKDTHSNWMKFVVCSRSETEQNLVAFQ 173

  Fly   232 HQENIYFYTTRDILPNEELMVWYCKDFASRLG------YDVDPETTIFGACKQAVEAEEEADEEE 290
            ....|.|...|.|.|.:|..|||.:::|..||      :|        ..|......||:|.:
Zfish   174 QNGRILFRCCRPISPGQEFRVWYAEEYAQGLGAIWDKIWD--------NKCISQGSTEEQATQ-- 228

  Fly   291 EEAEGEDGKPRYSMPAPEIPPDVAVSHITY--VMGLHLPVGA--GNGPANGSVAGSVSGATPPPP 351
                        :.|.|       ..|.::  ::.||..|..  .|..|..:....:......|.
Zfish   229 ------------NCPCP-------FCHYSFPTLVYLHAHVKRTHPNEYAQFTQTHPLESEAHTPI 274

  Fly   352 TATPCCR--------------RSSPPAHVSTTT-----STCNAHHP----------HIQHGRHAS 387
            |....|.              ..||...:||..     .|.|:..|          .|....||.
Zfish   275 TEVEQCLVASDEALSTQTQPVTESPQEQISTQNGQPIHQTENSDEPDASDIYTAAGEISDEIHAC 339

  Fly   388 VIIGQD-----------------RSPMASSDKDTAGSPLSGLD-HQMT--PQDGSVRSV-RSDEG 431
            |..|:.                 ..|...|......|..:||. ||.|  .|:.::.|. |..:.
Zfish   340 VDCGRSFLRSCHLKRHQRTIHSKEKPYCCSQCKKCFSQATGLKRHQHTHQEQEKNIESPDRPSDI 404

  Fly   432 YHSNEC------------------HEDGLTPPEDSS---DSESEHNYVLDCSKKAIAPKETVIAQ 475
            |...:|                  |.:.|...|..|   ::|.:|..|  |..|
Zfish   405 YPCTKCTLSFVAKINLHQHLKRHHHGEYLRLVESGSLTAETEEDHTEV--CFDK----------- 456

  Fly   476 AQKPSSSPPAVVMANTTTNSMISHSSPTATPICETDKNEYRKFKVKMPLKYEFKNKT-------- 532
             |.|:..||: ....:|.||:.....|             :|..|..|.....|||.
Zfish   457 -QDPNYEPPS-RGRKSTKNSLKGRGCP-------------KKVAVGRPRGRPPKNKNLEVEVQKI 506

  Fly   533 ---CVKQEPSLKEVD--QEMSLPQEEEE-DQVMHPEPDS--ICPSTTTHLGDEHMLMMERERERE 589
               |...|.|..:::  :....|:.::| |.|.||:..|  ||........:..:|       :.
Zfish   507 SPICTNCEQSFSDLETLKTHQCPRRDDEGDNVEHPQEASQYICGECIRAFSNLDLL-------KA 564

  Fly   590 RERIQEREPSNQQPASSTVIVLEHNSGGQARTIVPLSKPY--------YEPDPPGERYMRFGQPS 646
            .|.||:.|.|...|..........|.....|||....|||        :......:|:.:
Zfish   565 HECIQQGEGSYCCPHCDLYFNRMCNLRRHERTIHSKEKPYCCTVCLKSFTQSSGLKRHQQ----- 624

  Fly   647 SSILETILTSQHRLEAA--AAAANACRQANAATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLG 709
                ..:....||..:|  .||...|...      |.|.|:..|.||..:|
Zfish   625 ----SHLRRKSHRQSSALFTAAIFPCAYC------PFSFTDERYLYKHIRR-------------- 665

  Fly   710 QNPEQLSSSAVVVGEQEMTRATMIKGECSPPPPSHHHHNVIFSPSRHAAYLGAGEAGGHSPSPGY 774
                                                ||     |.....||...|.|..|...
Zfish   666 ------------------------------------HH-----PEMSLKYLSFQEGGVLSVEK-- 687

  Fly   775 PGYPHYGAAATSTFHS-PPHSSHSPFDRQSNASSGAGSATNLHLLQTSTQMLNHPLMQPLTPLQR 838
               ||..:....:|.: ....:||.|.:        |....|
Zfish   688 ---PHSCSQCCKSFSTIKGFKNHSCFKQ--------GEKVYL----------------------- 718

  Fly   839 LSPLRISPPSSLSPDGNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLS 903
                              ||..|...|       .:.||....:...|:..|.|:.|.|:|....
Zfish   719 ------------------CPDCGKAFS-------WFNSLKQHQRIHTGEKPYTCSQCGKSFVHSG 758

  Fly   904 NLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLH 968
            .|.||||||:||:||.|:.|.:||.|...|::|...|:|.:|.||..|.|.||...:||.|.:||
Zfish   759 QLNVHLRTHTGEKPFLCSQCGESFRQSGDLRRHEQKHSGVRPCQCPDCGKSFSRPQSLKAHQQLH 823

  Fly   969 SGQKPYACDLCPQKFTQFVHL-KLHKRLHT 997
            .|.|.:.|..|.:.||:..|| :.|:::|:
Zfish   824 VGTKLFPCTQCGKSFTRRYHLTRHHQKMHS 853

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.