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Protein Alignment Blimp-1 and Prdm6

DIOPT Version :9

Sequence 1:	NP_001261442.1	Gene:	Blimp-1 / 38638	FlyBaseID:	FBgn0035625	Length:	1216	Species:	Drosophila melanogaster
Sequence 2:	XP_008770411.1	Gene:	Prdm6 / 307305	RGDID:	1559594	Length:	609	Species:	Rattus norvegicus

Alignment Length:	750	Identity:	158/750 - (21%)
Similarity:	242/750 - (32%)	Gaps:	270/750 - (36%)

- Green bases have known domain annotations that are detailed below.

  Fly   327 PVGAGNGPANGSVAGSVSGA-------TPPPPTATPCCRRSSPPAHVSTTTSTCNAHHPHIQHGR 384
            |.|.|.||..||.|....||       .||||.     .|:.||
  Rat    28 PHGGGGGPLKGSGAALALGAPQSLQPPLPPPPP-----ERAEPP--------------------- 66

  Fly   385 HASVIIGQDRSPMASSDKDTAGSPLSGLDHQMTPQDGSVRSVRSDEGYHSNECHEDGLTPPEDSS 449
                                        ...:.|:..|:.||.|              ||...|:
  Rat    67 ----------------------------PDSLRPRPASLSSVSS--------------TPAPSST 89

  Fly   450 DSESEHNYVLDCSKKAIAPKETVIAQAQKPSSSPPAVVMANTTTNSMISHSSPTATPICETDKNE 514
            .:.|..:    |:..|.|....:...:..|.|..|..              :|.|.
  Rat    90 SASSASS----CAAAAAAAAAALAGLSALPVSQMPVF--------------APLAA--------- 127

  Fly   515 YRKFKVKMPLKYEFKNKTCVKQEPSLKEVDQEMSLPQEEEEDQVMHPEPDSICPSTTT------- 572
                             ..|..||          ||            |..:|...::
  Rat   128 -----------------AAVAAEP----------LP------------PKDLCLGASSGPGPAKC 153

  Fly   573 ----HLGDEHMLMMERERERERERIQEREPSNQQPASSTVIVLEHNSGGQAR-TIVPLSKPYYEP 632
                .:||        .|...|.|....|             |::...||.| .|:||::  :..
  Rat   154 GGGGSVGD--------GRGVPRFRCSAEE-------------LDYYLYGQQRMEIIPLNQ--HTS 195

  Fly   633 DPPGERYM----RFGQ-PSSSILETILTSQHRLEAAAAAANACRQANAATPPPTSP--------- 683
            ||.....|    |.|: |....|.::    .||...::||       ||.|||..|
  Rat   196 DPNNRCDMCADNRNGECPMHGPLHSL----RRLVGTSSAA-------AAAPPPELPEWLRDLPRE 249

  Fly   684 --------TEMAYSYKKSQR--YGNAVSPDSSSNLGQNPEQLSSSAV-------VVGEQEMTRAT 731
                    ..:||....:||  .|..:.|.....|  .||::.:.||       .:.:|:.|...
  Rat   250 VCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLL--PPEKVQTGAVRNTQHLWEIYDQDGTLQH 312

  Fly   732 MIKGECSPPPPSHHHHNVIFSPSRHAAYLGAGEAGGHSPSPGYPGYPHYGAAA-------TSTFH 789
            .|.|    ..||..........:||     .||.  :.....|.....|.|..       ...::
  Rat   313 FIDG----GEPSKSSWMRYIRCARH-----CGEQ--NLTVVQYRSNIFYRACVDIPRGTELLVWY 366

  Fly   790 SPPHSSHSPFDRQSNASSGAGSATNLHLLQTSTQML--NHPLMQPLTPLQRLSPLR-----ISPP 847
            :..::|......|..|..     .||::..|..:.:  ...|.||.....:|||..     :.|.
  Rat   367 NDSYTSFFGIPLQCIAQD-----ENLNVPSTVMEAMCRQDSLQQPFNKSSKLSPSGQQRSVVFPQ 426

  Fly   848 SSLSPDGNSCPRSGSPLSP--NSLASRGYRSLPYP-----LKKKDGKMH-YECNVCCKTFGQLSN 904
            :..|.:.:...:|| |:..  |.:..:..|.|..|     |..:....| ::|..|.|||.|...
  Rat   427 TPCSRNFSLLDKSG-PIEAGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFKTFTQRIL 490

  Fly   905 LKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHS 969
            |::|:.|.:.:||::|..|::||:|.:.|:.|.:.|:.::|.:|..|.:.|:..:.|..|:|.|:
  Rat   491 LQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAGATTLNNHIRTHT 555

  Fly   970 GQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVC 1004
            |:||:      :|...|.   |.|||  .|.|:||
  Rat   556 GEKPF------KKLGTFC---LLKRL--EDFPHVC 579

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.