DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and Prdm6

DIOPT Version :9

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:XP_011245206.1 Gene:Prdm6 / 225518 MGIID:2684938 Length:607 Species:Mus musculus


Alignment Length:745 Identity:156/745 - (20%)
Similarity:238/745 - (31%) Gaps:267/745 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   329 GAGNGPANGSVAGSVSGA----TPPPPTATPCCRRSSPPAHVSTTTSTCNAHHPHIQHGRHASVI 389
            |.|.||...|.|....||    .||||...|...|:.||                          
Mouse    31 GGGGGPLKASGAALALGAPQPLQPPPPPPPPPPERAEPP-------------------------- 69

  Fly   390 IGQDRSPMASSDKDTAGSPLSGLDHQMTPQDGSVRSVRSDEGYHSNECHEDGLTPPEDSSDSESE 454
                                                             .|||.|...|..|.. 
Mouse    70 -------------------------------------------------PDGLRPRPASLSSTP- 84

  Fly   455 HNYVLDCSKKAIAPKETVIAQAQKPSSSPPAVVMANTTTNSMISHSSPTATPICETDKNEYRKFK 519
                        ||..|..:.|...:::..|..:|..           :|.|:.:        ..
Mouse    85 ------------APSSTSASSASSCAAAAAAAALAGL-----------SALPVAQ--------MP 118

  Fly   520 VKMPLKYEFKNKTCVKQEPSLKEVDQEMSLPQEEEEDQVMHPEPDSICPSTTT------------ 572
            |..||.     ...|..||          ||            |..:|...:.            
Mouse   119 VFAPLA-----AAAVAAEP----------LP------------PKDLCLGASAGPGPAKCGGGGG 156

  Fly   573 HLGDEHMLMMERERERERERIQEREPSNQQPASSTVIVLEHNSGGQAR-TIVPLSKPYYEPDPPG 636
            .:||        .|...|.|....|             |::...||.| .|:||::  :..||..
Mouse   157 SVGD--------GRGVPRFRCSAEE-------------LDYYLYGQQRMEIIPLNQ--HTSDPNN 198

  Fly   637 ERYM----RFGQ-PSSSILETILTSQHRLEAAAAAANACRQANAATPPPTSP------------- 683
            ...|    |.|: |....|.::    .||...::||       ||.|||..|             
Mouse   199 RCDMCADNRNGECPMHGPLHSL----RRLVGTSSAA-------AAAPPPELPEWLRDLPREVCLC 252

  Fly   684 ----TEMAYSYKKSQR--YGNAVSPDSSSNLGQNPEQLSSSAV-------VVGEQEMTRATMIKG 735
                ..:||....:||  .|..:.|.....|  :||::.:..|       .:.:|:.|....|.|
Mouse   253 TSTVPGLAYGICAAQRIQQGTWIGPFQGVLL--SPEKVQTGVVRNTQHLWEIYDQDGTLQHFIDG 315

  Fly   736 ECSPPPPSHHHHNVIFSPSRHAAYLGAGEAGGHSPSPGYPGYPHYGA-------AATSTFHSPPH 793
                ..||..........:||     .||.  :.....|.....|.|       .....:::..:
Mouse   316 ----GEPSKSSWMRYIRCARH-----CGEQ--NLTVVQYRSNIFYRACIDIPRGTELLVWYNDSY 369

  Fly   794 SSHSPFDRQSNASSGAGSATNLHLLQTSTQ-MLNHPLMQPLTPLQRLSPLR-----ISPPSSLSP 852
            :|......|..|..     .||::..|..: |.....:||.....:|||..     :.|.:..|.
Mouse   370 TSFFGIPLQCIAQD-----ENLNVPSTVMEAMCRQDALQPFNKSSKLSPSGQQRSVVFPQTPCSR 429

  Fly   853 DGNSCPRSGSPLSP--NSLASRGYRSLPYP-----LKKKDGKMH-YECNVCCKTFGQLSNLKVHL 909
            :.:...:|| |:..  |.:..:..|.|..|     |..:....| ::|..|.|||.|...|::|:
Mouse   430 NFSLLDKSG-PMEAGFNQINVKNQRVLASPTSTSQLHSEFSDWHLWKCGQCFKTFTQRILLQMHV 493

  Fly   910 RTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPY 974
            .|.:.:||::|..|::||:|.:.|:.|.:.|:.::|.:|..|.:.|:..:.|..|:|.|:|:||:
Mouse   494 CTQNPDRPYQCGHCSQSFSQPSELRNHVVTHSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPF 558

  Fly   975 ACDLCPQKFTQFVHLKLHKRLHTNDRPYVC 1004
                  :|...|.   |.|||  .|.|:||
Mouse   559 ------KKLGTFC---LLKRL--EDFPHVC 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 SET 133..260 CDD:214614
C2H2 Zn finger 892..912 CDD:275368 8/19 (42%)
zf-H2C2_2 904..929 CDD:290200 9/24 (38%)
C2H2 Zn finger 920..940 CDD:275368 7/19 (37%)
zf-H2C2_2 932..957 CDD:290200 7/24 (29%)
C2H2 Zn finger 948..968 CDD:275368 6/19 (32%)
zf-H2C2_2 960..985 CDD:290200 8/24 (33%)
C2H2 Zn finger 976..996 CDD:275368 5/19 (26%)
C2H2 Zn finger 1004..1023 CDD:275368 1/1 (100%)
Prdm6XP_011245206.1 PR-SET_PRDM6 245..373 CDD:380968 24/140 (17%)
C2H2 Zn finger 476..496 CDD:275368 8/19 (42%)
zf-C2H2 502..524 CDD:333835 7/21 (33%)
C2H2 Zn finger 504..524 CDD:275368 7/19 (37%)
zf-H2C2_2 516..540 CDD:372612 6/23 (26%)
zf-C2H2 530..552 CDD:333835 6/21 (29%)
C2H2 Zn finger 532..552 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2461
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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