DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and prdm6

DIOPT Version :9

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:XP_002931772.5 Gene:prdm6 / 100494529 XenbaseID:XB-GENE-854907 Length:541 Species:Xenopus tropicalis


Alignment Length:518 Identity:119/518 - (22%)
Similarity:192/518 - (37%) Gaps:145/518 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   561 PEPDSICPSTTTHLGDEHMLMMERERERERERIQEREPSNQQPASSTVIVLEHNSGGQAR-TIVP 624
            |....:.|||.......:.|.:.:..|...||:| ..|..          |::...||.| .|:|
 Frog    81 PSVLGVLPSTEAVAPQRNELGISKCTEETLERLQ-CSPEE----------LDYYLYGQQRMEIIP 134

  Fly   625 LSKPYYEPDPPGERYM--RFGQ-PSSSILETILTSQHRLEAAAAAANACRQANAATPPPTSP--- 683
            ||.|..:|:...:...  |.|: |....|.::    .||...::.|       |..|||..|   
 Frog   135 LSTPTSDPNNRCDMCADNRNGECPMHGPLHSL----RRLVGTSSTA-------AVAPPPEIPEWL 188

  Fly   684 --------------TEMAYSYKKSQR----------YGNAVSPDSSSNLG-QNPEQL-------- 715
                          ..:||....:||          .|..|||:...|.| :|.:.|        
 Frog   189 RDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLVSPEKVQNGGVRNTQHLWEIYDQDG 253

  Fly   716 -----------SSSAVV--------VGEQEMT----RATMIKGECSPPPPSHHHHNVIFSPSRHA 757
                       |.|:.:        .|||.:|    |:.:....|...|  .....:::....:.
 Frog   254 TLQHFIDGGEPSKSSWMRYVRCARHCGEQNLTVVQYRSNIFYRACIDIP--RGTELLVWYNDSYT 316

  Fly   758 AYLG------AGEAGGHSPSPGYPGYPHYGAAATSTFHSPPHSSHSPFDRQSNASSGAGSATNLH 816
            ::.|      |.:...:.|||...     ..:...|..|        |::....||.        
 Frog   317 SFFGIPLQCIAQDENLNVPSPVIE-----AMSRQDTLQS--------FNKNGKLSSS-------- 360

  Fly   817 LLQTSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSP--NSLASRGYRSLPY 879
                    |...|:.|.||..|...|              ..:|| ||..  |.:..:..|.|..
 Frog   361 --------LQRSLVFPQTPCNRNYSL--------------LEKSG-PLDTGYNQINVKNQRVLAS 402

  Fly   880 P-----LKKKDGKMH-YECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHL 938
            |     |..:....| ::|..|.|||.|...|::|:.|.:.:||::|..|::||:|.:.|:.|.:
 Frog   403 PTSTSQLNSEFSDWHLWKCGQCFKTFTQRILLQMHVCTQNPDRPYQCGHCSQSFSQPSELRNHVV 467

  Fly   939 VHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRP 1001
            .|:.::|.:|..|.:.|:..:.|..|:|.|:|:||:.|:.|.:.|||...|..|:|:....:|
 Frog   468 THSSDRPFKCGYCGRAFAGATTLNNHIRTHTGEKPFKCERCDRSFTQATQLSRHQRMPNECKP 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 SET 133..260 CDD:214614
C2H2 Zn finger 892..912 CDD:275368 8/19 (42%)
zf-H2C2_2 904..929 CDD:290200 9/24 (38%)
C2H2 Zn finger 920..940 CDD:275368 7/19 (37%)
zf-H2C2_2 932..957 CDD:290200 7/24 (29%)
C2H2 Zn finger 948..968 CDD:275368 6/19 (32%)
zf-H2C2_2 960..985 CDD:290200 10/24 (42%)
C2H2 Zn finger 976..996 CDD:275368 8/19 (42%)
C2H2 Zn finger 1004..1023 CDD:275368
prdm6XP_002931772.5 PR-SET_PRDM6 191..319 CDD:380968 21/129 (16%)
COG5048 <348..530 CDD:227381 59/220 (27%)
C2H2 Zn finger 421..441 CDD:275368 8/19 (42%)
C2H2 Zn finger 449..469 CDD:275368 7/19 (37%)
zf-C2H2 475..497 CDD:395048 6/21 (29%)
C2H2 Zn finger 477..497 CDD:275368 6/19 (32%)
zf-H2C2_2 490..514 CDD:404364 10/23 (43%)
C2H2 Zn finger 505..523 CDD:275368 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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