DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and Prdm11

DIOPT Version :9

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:XP_030101794.1 Gene:Prdm11 / 100042784 MGIID:2685553 Length:1198 Species:Mus musculus


Alignment Length:758 Identity:167/758 - (22%)
Similarity:253/758 - (33%) Gaps:249/758 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 ARRARSRSRSRSPTP-DGNQDYDVTR-MREEDF---ERLAVY------------LVPDVQAERGL 114
            :||....|....|.. .|.:|..||: .::.||   |....|            .|.|.....|:
Mouse    67 SRRLEPSSMEVEPKKLKGKRDLIVTKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPVGI 131

  Fly   115 PNRADKTLPRSLTLKSSMVYSTPNVKTEGVWS-----SGVIPRGTRFGPFEG-IPTSNYPNDKNK 173
            |:||..|:|:.:.:          ||..|..|     :.|||:|..|||:|| |.|    .||:.
Mouse   132 PDRAALTIPQGMEV----------VKDAGGESDVRCINEVIPKGHIFGPYEGQIST----QDKSA 182

  Fly   174 ARYFWRVQGTRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLSVMNLVACQHQENIYF 238
            ..:.|.:            :.|::.|..:||||.:::||||||..:......||:|.||.|.|||
Mouse   183 GFFSWLI------------VDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYF 235

  Fly   239 YTTRDILPNEELMVWYCKDFASRLGYDVDPET----TIFGACKQAVEAEEEADEEEEEAEG---- 295
            ...|||.|.|.|.|||.:|:..|| :.:..||    ...|..:...|..|:|.|..|:..|    
Mouse   236 RACRDIRPGERLRVWYSEDYMKRL-HSMSQETIHRNLARGEKRLQREKAEQALENPEDLRGPTQF 299

  Fly   296 ---EDGKPRY--SMPAPEIPPDVAVSHITYVMG--LHLPVGAGNGPANGSVAGSVSGATPPPPTA 353
               :.|:..|  |....:|.|......|..:..  |...:.:||..|.                 
Mouse   300 PVLKQGRSPYKRSFDEGDIHPQAKKKKIDLIFKDVLEASLESGNVEAR----------------- 347

  Fly   354 TPCCRRSSPPAHVSTTTSTCNAHHPHIQ---HGRHASVIIGQDRSPMASSDKDTAGSPLSGLDHQ 415
                       .::.:||......|..|   :|| |::..|..|:|              |....
Mouse   348 -----------QLALSTSLVIRKVPKYQDDDYGR-AALTQGICRTP--------------GEGDW 386

  Fly   416 MTPQDGSVRSVRSDEGYHSNECHEDGLTPPEDSSDSESEHNYVLD---------CSKKAIAPKET 471
            ..||     .|..:.|...:|..|    |....:||.:|.:...|         |.......|:.
Mouse   387 KVPQ-----RVAKELGPLEDEEEE----PTSFKADSPAEASLASDPHELPTTSFCPNCIRLKKKV 442

  Fly   472 VIAQAQ----------KPSSSPPAVVMANTTTNSMISHSSPTATPICETDKNE------------ 514
            ...||:          :||..||.|:.....::...|.|..:...|.|.|..|            
Mouse   443 RELQAELDMLKSGKLPEPSLLPPQVLELPEFSDPAASESMVSGPAIMEDDDQEVDSADESVSNDV 507

  Fly   515 -----------------YRKFKVKMPLKYEFKNKTCVKQEPSLKEV------------------- 543
                             .|:||.:...|:.|     ::..|:|.|:                   
Mouse   508 MTATDEPSKMSSATGRRIRRFKQEWLKKFWF-----LRYSPTLNEMWCHVCRQYTVQSSRTSAFI 567

  Fly   544 --DQEMSLPQEEEEDQV-------------MHPE-PDSICP------STTTHLG----------- 575
              .::..:...:...|.             |||| .:.:|.      :|..||.           
Mouse   568 IGSKQFKIHTIKLHSQSNLHKKCLQLYKLRMHPEKTEEMCRNMTLLFNTAYHLALEGRPYLDFRP 632

  Fly   576 -------------DEHM------LMMERERERERERIQEREPSNQQPASSTVIVLEHNSGGQART 621
                         |::|      :::.......||.:.||  ..|.|..|  |:|:..|......
Mouse   633 LAELLRKCELKVVDQYMNEGDCQILIHHIARALREDLVER--IRQSPCLS--IILDGQSDDLLAD 693

  Fly   622 IVPLSKPYYEPD-PPGERYMRFGQPSSSILETILTSQHRLEAA 663
            .|.:...|...| ||...::...:...|..|:.|.:..|..||
Mouse   694 TVAVYVQYTSSDGPPATEFLSLQELGFSSTESYLQALDRAFAA 736

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 SET 133..260 CDD:214614 49/132 (37%)
C2H2 Zn finger 892..912 CDD:275368
zf-H2C2_2 904..929 CDD:290200
C2H2 Zn finger 920..940 CDD:275368
zf-H2C2_2 932..957 CDD:290200
C2H2 Zn finger 948..968 CDD:275368
zf-H2C2_2 960..985 CDD:290200
C2H2 Zn finger 976..996 CDD:275368
C2H2 Zn finger 1004..1023 CDD:275368
Prdm11XP_030101794.1 zf_PR_Knuckle <101..127 CDD:375871 4/25 (16%)
PR-SET_PRDM11 135..261 CDD:380972 54/152 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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