DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spo and phm

DIOPT Version :9

Sequence 1:NP_001286943.1 Gene:spo / 38631 FlyBaseID:FBgn0003486 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_001285414.1 Gene:phm / 32857 FlyBaseID:FBgn0004959 Length:574 Species:Drosophila melanogaster


Alignment Length:574 Identity:118/574 - (20%)
Similarity:209/574 - (36%) Gaps:164/574 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 APGPRPW--PIIGNLHLLDRYRDSPFAGFTALAQQYGDIYSLTFGHTRCLVVNNLELIREVLNQN 117
            ||.|.||  |.:|.|..||  ..:|......||::||.|:.|..|....:|:::..|:|:...::
  Fly    47 APPPGPWGLPFLGYLPFLD--ARAPHKSLQKLAKRYGGIFELKMGRVPTVVLSDAALVRDFFRRD 109

  Fly   118 GKVMSGRPDFIRYHKLFGGERSNSLALCDWSQLQQKRRNLARRHCSPREFSCFYMKMSQIGCEEM 182
              ||:||......|.:.||..    .:|    .|:.....|||                    |.
  Fly   110 --VMTGRAPLYLTHGIMGGFG----IIC----AQEDIWRHARR--------------------ET 144

  Fly   183 EHWNRELGNQLVPGE------------------------------PINIKPLILKACANMFSQYM 217
            ..|.:.||....|||                              .:|..|.:..:..|:.:..:
  Fly   145 IDWLKALGMTRRPGELRARLERRIARGVDECVRLFDTEAKKSCASEVNPLPALHHSLGNIINDLV 209

  Fly   218 CSLRFDYDDVDFQQIVQYFDEIFWEINQGHPLDFLPWLYPFYQRHL-NKIINWSSTIRG-----F 276
            ..:.:..||.|:..:.:..:|....|.....::|||||     ||| ..:.|....:.|     .
  Fly   210 FGITYKRDDPDWLYLQRLQEEGVKLIGVSGVVNFLPWL-----RHLPANVRNIRFLLEGKAKTHA 269

  Fly   277 IMERII------------------------------------------RHRELSVDLDEPDRDFT 299
            |.:||:                                          ...|...|.:|.|.:.|
  Fly   270 IYDRIVEACGQRLKEKQKVFKELQEQKRLQRQLEKEQLRQSKEADPSQEQSEADEDDEESDEEDT 334

  Fly   300 ---DALLKSLLEDKDVSR-----NTIIFMLEDFIGG--HSAVGNLVMLVLAYIAKNVDIGRRIQE 354
               :.:|:..|..:|...     :.:..:|.|..|.  .:::..|...:| |:|:.    :|.|.
  Fly   335 YEPECILEHFLAVRDTDSQLYCDDQLRHLLADLFGAGVDTSLATLRWFLL-YLARE----QRCQR 394

  Fly   355 EIDAIIEEENRSINLLDMNAMPYTMATIFEVLRYSS-SPI-VPHVATEDTVISGYGVTKGTIVFI 417
            .:..::.....|..|.::..:.|..|.|.|.:|..| .|: :||...|:.|:..|.:..|:::..
  Fly   395 RLHELLLPLGPSPTLEELEPLAYLRACISETMRIRSVVPLGIPHGCKENFVVGDYFIKGGSMIVC 459

  Fly   418 NNYVLNTSEKFWVNPKEFNPLRFLEPSKEQSPKNSKGSDSGIESDNEKLQLKRNIPHFLPFSIGK 482
            :.:.::.....:..|:||.|.|||.            :|...::.          |.|:|||.|.
  Fly   460 SEWAIHMDPVAFPEPEEFRPERFLT------------ADGAYQAP----------PQFIPFSSGY 502

  Fly   483 RTCIGQNLVRGFGFLVVVNVMQRYNISSHNPSTIKISPESLALPADCFPLVLTP 536
            |.|.|:.:.|....|....:::|:::...:.:.:.::.||        .:.|||
  Fly   503 RMCPGEEMARMILTLFTGRILRRFHLELPSGTEVDMAGES--------GITLTP 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spoNP_001286943.1 p450 56..540 CDD:299894 117/573 (20%)
phmNP_001285414.1 p450 49..555 CDD:278495 116/572 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45469057
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X6
21.930

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