DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spo and Cyp1b1

DIOPT Version :9

Sequence 1:NP_001286943.1 Gene:spo / 38631 FlyBaseID:FBgn0003486 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_037072.1 Gene:Cyp1b1 / 25426 RGDID:2460 Length:543 Species:Rattus norvegicus


Alignment Length:571 Identity:150/571 - (26%)
Similarity:257/571 - (45%) Gaps:103/571 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 TILAILLSVLATSYICIIYGVKRRVLQPVKTKNSTEINHNAYQKYTQAPGPRPWPIIGNLHLLDR 72
            |||.:|:||||      |..:.:.:|:..:.|           .::..|||.|||:|||...:.|
  Rat    21 TILLLLVSVLA------IVHLGQWLLRQWRRK-----------PWSSPPGPFPWPLIGNAASVGR 68

  Fly    73 YRDSPFAGFTALAQQYGDIYSLTFGHTRCLVVNNLELIREVLNQNGKVMSGRPDFIRYHKLFGGE 137
               :....|..||::|||::.:..|....:|:|....|.:.|.|.|.|.:.||.|..:..:.|| 
  Rat    69 ---ASHLYFARLARRYGDVFQIRLGSCPVVVLNGESAIHQALVQQGGVFADRPPFASFRVVSGG- 129

  Fly   138 RSNSLALCDWSQLQQKRRNLARRHCSPREFSCFYMKMSQIGCEEMEHWNREL----------GNQ 192
              .|||...:|:..::||..|  :.:.|.||..:.:...:.........|||          |..
  Rat   130 --RSLAFGHYSERWKERRRAA--YGTMRAFSTRHPRSRGLLEGHALGEARELVAVLVRRCAGGAC 190

  Fly   193 LVPGEPINIKPLILKACANMFSQYMCSLRFDYDDVDFQQIVQYFDEIFWEINQGHPLDFLPWLYP 257
            |.|.:|      |:.|.||:.|......|:::||.:|.:::.:.:|....:..|..:|.:|||..
  Rat   191 LDPTQP------IIVAVANVMSAVCFGCRYNHDDAEFLELLSHNEEFGRTVGAGSLVDVMPWLQL 249

  Fly   258 FYQ---------RHLNKIINWSSTIRGFIMERIIRHRELSVDLDEPDRDFTDALLKSL------- 306
            |..         ..:|:  |:|:    |::::.:||||..|....| ||..||.:.|.       
  Rat   250 FPNPVRTIFREFEQINR--NFSN----FVLDKFLRHRESLVPGAAP-RDMMDAFILSAEKKATGD 307

  Fly   307 -------LEDKDVSRNTIIFMLEDFIG-GHSAVGNLVMLVLAYIAKNVDIGRRIQEEIDAIIEEE 363
                   |:.:||...     :.|..| ....:...::.:|....:..|:..|:|.|:|.::..:
  Rat   308 PGDSPSGLDLEDVPAT-----ITDIFGASQDTLSTALLWLLILFTRYPDVQARVQAELDQVVGRD 367

  Fly   364 NRSINLLDMNAMPYTMATIFEVLRYSS-SPI-VPHVATEDTVISGYGVTKGTIVFINNYVLNTSE 426
             |...:.|...:||.||.::|.:|::| .|: :||..|.:|.:.||.:.|.|:||:|.:.:|...
  Rat   368 -RLPCMSDQPNLPYVMAFLYESMRFTSFLPVTLPHATTANTFVLGYYIPKNTVVFVNQWSVNHDP 431

  Fly   427 KFWVNPKEFNPLRFLEPSKEQSPKNSKGSDSGIESDNEKLQLKRNIPHFLPFSIGKRTCIGQNLV 491
            ..|.||::|:|.|||                    |.:....|......:.||:|||.|||:.|.
  Rat   432 AKWSNPEDFDPARFL--------------------DKDGFINKALASSVMIFSVGKRRCIGEELS 476

  Fly   492 RGFGFLVVVNVMQRYNI--SSHNPSTIKISPESLALPADCFPLVLTPREKI 540
            :...||.:..:..:.|.  :.:.||.:..| ..|::....|.:.::.||.:
  Rat   477 KTLLFLFISILAHQCNFKANQNEPSNMSFS-YGLSIKPKSFKIHVSLRESM 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spoNP_001286943.1 p450 56..540 CDD:299894 139/521 (27%)
Cyp1b1NP_037072.1 CYP1B1-like 81..518 CDD:410768 124/481 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45226
OrthoDB 1 1.010 - - D278622at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X6
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.930

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