DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment spo and Cyp2d2

DIOPT Version :9

Sequence 1:NP_001286943.1 Gene:spo / 38631 FlyBaseID:FBgn0003486 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_036862.2 Gene:Cyp2d2 / 25053 RGDID:2471 Length:500 Species:Rattus norvegicus


Alignment Length:564 Identity:136/564 - (24%)
Similarity:236/564 - (41%) Gaps:116/564 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AALIYTILAILLSVLATSYICIIYGVKRRVLQPVKTKNSTEINHNAYQKYTQAPGPRPWPIIGNL 67
            |.:|:|.:.:||..|                          ::.:.:......|||.|.|.:|||
  Rat    11 AVVIFTAIFLLLVDL--------------------------VHRHKFWTAHYPPGPVPLPGLGNL 49

  Fly    68 HLLDRYRDSPFAGFTALAQQYGDIYSLTFGHTRCLVVNNLELIREVLNQNGKVMSGRPDFIRYHK 132
            ..:| :.:.|::.: .|..:|||::||.......:|:|.|:.:||:|...|:..:.||....|:.
  Rat    50 LQVD-FENMPYSLY-KLRSRYGDVFSLQIAWKPVVVINGLKAVRELLVTYGEDTADRPLLPIYNH 112

  Fly   133 LFGGERSNSLALC----DWSQLQQKRRNLARRHCSPREFSCFYMKMSQIGCEEMEHWNRELGNQL 193
            |..|.:|..:.|.    :|.:              .|.||...::...:|.:.:|.|..|....|
  Rat   113 LGYGNKSKGVVLAPYGPEWRE--------------QRRFSVSTLRDFGVGKKSLEQWVTEEAGHL 163

  Fly   194 V------PGEPINIKPLILKACANMFSQYMCSLRFDYDDVDFQQIVQYFDEIFWEIN--QGHPLD 250
            .      ...|.|...|:.||.:|:.:..:.:.||:|:|..|.::::...|.|.|..  ....|:
  Rat   164 CDTFAKEAEHPFNPSILLSKAVSNVIASLVYARRFEYEDPFFNRMLKTLKESFGEDTGFMAEVLN 228

  Fly   251 FLPWL----------YPFYQRHLNKIINWSSTIRGFIMERIIRHRELSVDLDEPDRDFTDALLKS 305
            .:|.|          :|    .||..|       ..:.:.:|.|:: |.|..:|.||.|||.|..
  Rat   229 AIPILLQIPGLPGKVFP----KLNSFI-------ALVDKMLIEHKK-SWDPAQPPRDMTDAFLAE 281

  Fly   306 LLEDKD------VSRNTIIFMLEDFIGGHSAVGNLVMLVLAYIAKNVDIGRRIQEEIDAIIEEEN 364
            :.:.|.      ...|..:.:::.|:.|.......:...|..:..:.|:.||:.||||.:|.:..
  Rat   282 MQKAKGNPESSFNDENLRLVVIDLFMAGMVTTSTTLSWALLLMILHPDVQRRVHEEIDEVIGQVR 346

  Fly   365 RSINLLDMNAMPYTMATIFEVLRYSS--SPIVPHVATEDTVISGYGVTKGTIVFINNYVLNTSEK 427
            |. .:.|...||:|.|.|.||.|::.  ...:||:.:.|....|:.:.|||.:..|...:...|.
  Rat   347 RP-EMADQARMPFTNAVIHEVQRFADIVPTNIPHMTSRDIKFQGFLIPKGTTLIPNLSSVLKDET 410

  Fly   428 FWVNPKEFNPLRFLEPSKEQSPKNSKGSDSGIESDNEKLQLKRNIPHFLPFSIGKRTCIGQNLVR 492
            .|..|..|:|..||:         ::|:....|:             |:|||.|:|.|:|:.|.|
  Rat   411 VWEKPLRFHPEHFLD---------AQGNFVKHEA-------------FMPFSAGRRACLGEPLAR 453

  Fly   493 GFGFLVVVNVMQRYNI---------SSHNPSTIKISPESLALPA 527
            ...||....::||::.         |:|....:.::|:...|.|
  Rat   454 MELFLFFTCLLQRFSFSVLAGRPRPSTHGVYALPVTPQPYQLCA 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spoNP_001286943.1 p450 56..540 CDD:299894 130/511 (25%)
Cyp2d2NP_036862.2 CYP2D 68..495 CDD:410756 117/475 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45226
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X6
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.