DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)psg2 and Zc3h13

DIOPT Version :9

Sequence 1:NP_647974.1 Gene:l(3)psg2 / 38630 FlyBaseID:FBgn0035617 Length:1929 Species:Drosophila melanogaster
Sequence 2:XP_036014719.1 Gene:Zc3h13 / 67302 MGIID:1914552 Length:1752 Species:Mus musculus


Alignment Length:1404 Identity:286/1404 - (20%)
Similarity:473/1404 - (33%) Gaps:437/1404 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   260 RTKAETTDHNSKESKLPSETKSTEPLIENNRSRELPQHKNYVRGKTS-----------NRSHDRT 313
            |...:..|.:.||.....|.:|              ..:|::|.::|           :||..|.
Mouse   591 RDVRDVRDGHRKEDVYQEEARS--------------YGRNHLREESSRVELRNDSRNESRSEIRN 641

  Fly   314 QNRGRTRERSKE---------------SHGKSTENSKNKDEGRGKGRERDLF-RRKSRERSQDKN 362
            ...||:|.|..|               || .|..|..:..|.|....|||.: .|.:|:.::|.:
Mouse   642 DRMGRSRGRGPELPEKGSRGTRGSQMDSH-SSGSNYHDSWETRSSYPERDRYPERDTRDPARDSS 705

  Fly   363 LNR---AKSMNLSKEKDEVGGEP-RNTASGKSQERDQSRGKTK---------DRSRERDRTRNKT 414
            ..|   .:....::|:|:....| |:....:..|||:.|.:.:         ||.|:|||.|.:.
Mouse   706 FERRHGERDRRDNRERDQRPSSPIRHQGRSEELERDERREERRIDRVDERRDDRVRDRDRDRERE 770

  Fly   415 REKSQARDQTRSKANDAEHTRAKSRKRSSSRDKRREKSKEKLGD-KEKNEDLSKEKLEGKSTEHS 478
            ||:.:.|::.|.|..:.|..|.::|:|...|:|.||:.:|:..| ::::.|..:|:      |..
Mouse   771 REREREREREREKERERELERERAREREREREKERERERERERDQRDRDHDRERER------ERE 829

  Fly   479 EKRNESKVKNKDTNE-ENANKKLRERSKDRNHSKERLHERTQNKSEERKPEAKKVRNAIENSKEA 542
            .:|.:.:.:.::..| |...::.|||.::|...:||..||.:.::.||:.|.::.|...:..|..
Mouse   830 REREKEREREREERERERERERERERERERERERERERERERERAREREKERERQREWEDKDKGR 894

  Fly   543 PTDRKK--------DKLLGPLGEKTDERSKDKQIKRSREQSVTKCPKESGKDTLMEHPPQENGLD 599
            ...|:|        |::  |.....:.:||    ||.|.:. :..|::|.| ...||.|..:...
Mouse   895 DDRREKREDIHVREDRI--PRDSHEERKSK----KRYRNEG-SPSPRQSPK-RRREHSPDSDTYH 951

  Fly   600 GSKRSSMPHESFSESAKTREHASRRKNQTLSP---WGSREGTPPMTPPQVQIPQTPIVDIANPKD 661
            .....:..|...|:..:.:|      :::|||   ...|:|                    ..|:
Mouse   952 SGDDKNEKHRLLSQVVRPQE------SRSLSPSHLTEDRQG--------------------RWKE 990

  Fly   662 FDIFADSPPRVNTAVSAPAATIERSTTPPLKSSIPIVPIAKADKLAPLLKASEIHSRIGALLEES 726
            .|           ..|....:..|.....||..               |...:........::.|
Mouse   991 ED-----------RKSERKESSRRYEEQELKEK---------------LSCGDRQREQAESVDSS 1029

  Fly   727 DLHLDNLLATKEQLFR------RTNEYKERKEAPKEIKAEYLPNSRHNRSATG--RAEVEHHKSQ 783
            .:...:||:.::...|      |.::.|::.:|||:      |..:......|  |..:|.|:. 
Mouse  1030 RVRAQDLLSHRQAEDRDRDGSDRAHDEKKKAKAPKK------PVKKKKEEDVGVERGNLETHED- 1087

  Fly   784 PRHINPFKRESVLSGRKSSSRPS-SKERRFQRHDSEVENWDRDLELERNQLNGSQLTGFQPRKSD 847
                     ..|.|.:|...:.: .|:|:..:.||:|                          ||
Mouse  1088 ---------SQVFSPKKGQKKKNIEKKRKRSKGDSDV--------------------------SD 1117

  Fly   848 EYTKFSIKKEKDLTPPPLQTNFTRTTIKIERNATPPRHMEHDVLVRNGAVATNAPPPAKEQESPD 912
            |......||::....|||........|..:::..    :|..:...|.|.:        :....|
Mouse  1118 EEAAPQNKKKRGPRTPPLAIKEELADISTDKDGV----LEDPLKKENTAFS--------DWSDED 1170

  Fly   913 TDDYIDNWENDDSLA-----SMPKNAPPVTPTPAPNANASLNATPLPPVASQFNGDDDDDDSNAL 972
            ..|..:..|.:.:.|     |.|.....:.|.|.|.|.||..||.|...|           .:|.
Mouse  1171 VPDRTEGLEAEHTAATATPGSTPSPLSSLLPPPPPVAAASTAATALASSA-----------VSAT 1224

  Fly   973 WNAKSTPPPRRKNENLPEGNIHELYDKFMNSIKMSNEHLEP----ETLDTSKNSSLSNSPAEESS 1033
            .:|.|:......|.|..|.:..:.:......:::|:..||.    :.:|..::|||         
Mouse  1225 TSATSSSSAATSNTNGSEDSHRKCHRARGEKVEVSHVTLEDTPHRKLVDQKRSSSL--------- 1280

  Fly  1034 SGTETSSTSSSSSETEDDSSSDDDANESSSNDESATTSGNCNTNQDEAAGKEQLQKKNNVSKDLR 1098
             |:..|..|.:|...           .|.||| ||..||:     |:.:.|..|   ::.|:|..
Mouse  1281 -GSNRSHRSHTSGRL-----------RSPSND-SAHRSGD-----DQGSRKRVL---HSGSRDRE 1324

  Fly  1099 KLKSLEDNLARIQMMRENYDAGDEISEELLKMESLFLMQRNAIMDKYRKQELKSNSSEDQQPVDE 1163
            |.|||                  ||:.|           |.:.:|:.::.|...::|.|:|    
Mouse  1325 KTKSL------------------EITGE-----------RKSRIDQLKRGEPSRSTSSDRQ---- 1356

  Fly  1164 QGTVQAQEVVKETSFPVNSIFSANREAIKLTISPLKLTRKSVIFDKDEADLPETSKAEPPKQTLQ 1228
                                                                             
Mouse  1357 ----------------------------------------------------------------- 1356

  Fly  1229 KPQKEIAIVKPTIVESRSKPKLRSPPPSSGSRRRSRSRS---ISRSRARRRGSRTKSRTPSPRRR 1290
                          :|||....||.|.|.   |:..|||   .||.|.:.| .|.:......|.|
Mouse  1357 --------------DSRSHSSRRSSPESD---RQVHSRSGSFDSRDRLQER-DRYEHDRERERDR 1403

  Fly  1291 RLPSPRRVSRYAKRIGGGAVGGTRKGRSHSRSLTRSRTRSRSPSRRRRLPPAGHRKRGSISPIPQ 1355
            |.|..|...|.|:           |....:|...|.|.|.|...|||.|    .|:|..:...| 
Mouse  1404 RDPRQREWDREAE-----------KEWPRTRDRDRLRERDRDRDRRRDL----DRERERLISDP- 1452

  Fly  1356 KLAGPRSPPPSRRRQSLSRDRERE---HLSRSRSPLPFKPPSPPMRRSWSKARSPTRRRSFSRSR 1417
                            :.||||||   ..|:..|.          :||..|..|...|.....||
Mouse  1453 ----------------MERDRERERTFETSQLESG----------KRSEVKLESEHERDLEGSSR 1491

  Fly  1418 SRSISPRSRLSAEEAFANYFEENQGMEAAAYYYNMSLMQQEDQNALGEGY-DAYAAYMDS----- 1476
            ......:.|:..:......||:....|...........:.:|.::||.|. :.|....|.     
Mouse  1492 DSVALDKERMDRDLGSVQGFEDVSKAERTESLEGDDESKLDDAHSLGSGAGEGYEPISDDELDEI 1556

  Fly  1477 -AYNMEQAYAQYSEEYSNTYMD--------YMVEVASSPQAPG-SVLRELPMAPMMPVESLAPIA 1531
             |.:.|:...|..||.....:|        .|.:....|:.|| ::|:..|.|.::.|.....:|
Mouse  1557 LAGDAEKREDQQEEEKMPDPLDVIDVDWSGLMPKHPKEPREPGAALLKFTPGAVLLRVGISKKLA 1621

  Fly  1532 PLEAMPSMAATASGMPVAVQKGNVLEIVPSGEDILEAEE 1570
            ..|....:..|...:   |:|       |...|.|...|
Mouse  1622 GSELFTKVKETCQQL---VEK-------PKDADSLFEHE 1650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)psg2NP_647974.1 PRP38_assoc 374..450 CDD:289628 26/85 (31%)
Zc3h13XP_036014719.1 zf-CCCH 42..63 CDD:395517
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7619
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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