DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)psg2 and Topors

DIOPT Version :9

Sequence 1:NP_647974.1 Gene:l(3)psg2 / 38630 FlyBaseID:FBgn0035617 Length:1929 Species:Drosophila melanogaster
Sequence 2:NP_001102128.1 Gene:Topors / 362501 RGDID:1305270 Length:1042 Species:Rattus norvegicus


Alignment Length:702 Identity:147/702 - (20%)
Similarity:252/702 - (35%) Gaps:206/702 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 VSVVEQARKENGSGGTPNAQAEDAD-DSEGLYSESDSSGEDL------KNVEDVQKARKEKQEEA 129
            ||.:.||..::.:.|...:.:|... ....|.:.||||.|:|      ..::.|| |..:...::
  Rat   409 VSTIRQAPWDDETPGPSYSNSEQVHVGVSSLLNSSDSSDEELVSGGAASQIQGVQ-ANDDVNNDS 472

  Fly   130 AAAT---------LPQAPPTPFLGINPLRFHMRAPCFEFPRMGFMPRMNRGGPRGMRPTFFGRPP 185
            .:::         .|.|..||.|      ..:.:...|   :|...:|.....:....::.....
  Rat   473 DSSSDNCVIVGFVKPLAERTPEL------VELSSDSEE---LGSYEKMETVKTQEQEQSYSSGDS 528

  Fly   186 AANRMGAPMMGGLPTQGPPPGAYAPQNPPPTGINSNSGRCKRLQSDVIWTALQPPVSFVFNLVSE 250
            .|:|..:|                         .|..|:.:::..                  |.
  Rat   529 DASRASSP-------------------------RSVLGKDEQMGK------------------SH 550

  Fly   251 CS-----NTKHENCRTKAETTDHNSKESKLPSETKSTEPLIENNRSRELPQHKNYVRGKTSNRSH 310
            |.     |:|.|..|:.:.:|..:|..::   ..::..|.  |:|.|         :|..|..|.
  Rat   551 CDSDTRINSKKEEKRSTSLSTPRDSSSTR---GDRACSPY--NHRHR---------KGGRSRSSD 601

  Fly   311 DRTQNR-GRTRERSKESHGKSTENSKNK----DEGRGKGRERDLFRRKSRERSQDKNLN-RAKSM 369
            .|:|:| |..:...::.|||  :..|||    .|...|.|.|   :.|.|.|::|.:.: |::::
  Rat   602 SRSQSRSGHDQRNHRKHHGK--KRLKNKRSRSRESSSKPRAR---KDKKRSRTRDSSWSRRSQTL 661

  Fly   370 NLSKEKDEVGGEPRNTASGKSQERDQSRGKTKDRSRERDR------------------TRNKTRE 416
            :||           :.::.:|:.|....||.:.|||.|||                  :|||.|:
  Rat   662 SLS-----------SGSTSRSRSRSSDHGKRRSRSRNRDRYYLRNNYGSKYKWEYTYYSRNKDRD 715

  Fly   417 --KSQARDQTRSKANDAEHTRAKSRKRSSSRDKRREKSKEKLGDKEKNEDLSK----EKLEGKST 475
              :|..|.:|.|        ||...::|||.:.|.:...|:...:.||....|    |:...:|.
  Rat   716 GYESSYRRRTLS--------RAHYSRQSSSPEFRIQSFSERTNARRKNHSERKYYYYERHRSRSV 772

  Fly   476 EHSEKRNESKVKNKDTNEENANKKLRERSKDRNHSKERLHERTQNKSEERKPEAKKVRNAIENSK 540
            ..:..|..|.|.::..||:...|:   :.|.|:         .::.:||.:|.........|:..
  Rat   773 SSNRSRTTSAVPDRMRNEKPGGKR---KYKTRH---------LEDTNEEAQPSRAFASRVKESHY 825

  Fly   541 EAPTDRKKDKLLGPLGEK------TDERSKDKQIK------RSREQSVTKCPKESGKDTLMEHPP 593
            :.|:     ||.|  |.|      :|.|..|::.|      |:|..||....:....||...|  
  Rat   826 QKPS-----KLDG--GSKDESDSFSDSRPSDRETKHKRRKRRARSLSVEIVYEGKATDTSKHH-- 881

  Fly   594 QENGLDGSKRSSMPHESFSESAKTREHASRRKNQTLSPW---------GSREGTPPMTPPQVQIP 649
                    |:....|:.     |.|:|  ...|.:.||.         |.......:...|..:|
  Rat   882 --------KKKKKKHKK-----KHRKH--HGDNTSRSPVVITIDSDSDGDAGVKASVECSQSSLP 931

  Fly   650 Q-------TPIVDIANPKDFDIFADSPPRVNTAVSAPAATIERSTTPPLKSS 694
            |       ||..:....||.....|.....:......|.|.:.||:..::||
  Rat   932 QPGQDEVSTPSSEAFETKDVVTIEDELAVEDKECDVTALTNDLSTSQAVESS 983

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)psg2NP_647974.1 PRP38_assoc 374..450 CDD:289628 24/95 (25%)
ToporsNP_001102128.1 RING 103..146 CDD:238093
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339571
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.930

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