DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(3)psg2 and SRRM1

DIOPT Version :9

Sequence 1:NP_647974.1 Gene:l(3)psg2 / 38630 FlyBaseID:FBgn0035617 Length:1929 Species:Drosophila melanogaster
Sequence 2:NP_001353524.1 Gene:SRRM1 / 10250 HGNCID:16638 Length:918 Species:Homo sapiens


Alignment Length:1295 Identity:265/1295 - (20%)
Similarity:400/1295 - (30%) Gaps:476/1295 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   434 TRAKSRKRSSSRDKRREKSKEKLGDKEKNEDLSKEKLE-------GKSTEHSEKR---------N 482
            |.|:...|.|::.|:..|..:.....||..|:||..||       .:.||.....         |
Human     9 TSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFN 73

  Fly   483 ESKVKNKDT-----------NEENANKKLRERSKDRNHSKERLHERTQNKSEERKPEAKKVRNAI 536
            :.:|||.|:           |.:||.:.:.|.......::|.:........|.:|.|.|  :..|
Human    74 QLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQENIAGIPSAFLELKKEEIK--QRQI 136

  Fly   537 ENSKEAPTDRKKDKLLGPLGEKTDERSKDKQIKRSREQSVTKCPKESGKDTLMEHPPQENGLDGS 601
            |..|.|..            :|.|| .|||:.|..:|.|..|                      .
Human   137 EQEKLASM------------KKQDE-DKDKRDKEEKESSREK----------------------R 166

  Fly   602 KRSSMPHESFSESAKTREHAS-----RRKNQTLSPWGSREGTPPMTPPQVQIPQTPIVDIANPKD 661
            :||..|....|.|...|..:|     |:::.:.||....:...|...|:.: .:||.:       
Human   167 ERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKK-EKTPEL------- 223

  Fly   662 FDIFADSPPRVNTAVSAPAATIERSTTPPLKSSIPIVPIAKADKLAPLLKASEIHSRIGALLEES 726
                    |..:..|..|:.....||:..||...| .||.:..:.:|                  
Human   224 --------PEPSVKVKEPSVQEATSTSDILKVPKP-EPIPEPKEPSP------------------ 261

  Fly   727 DLHLDNLLATKEQLFRRTNEYKERKEAPKEIKAEYLPNSR---HNRSATGRAEVEH------HKS 782
                               |...:||..||   :..|.||   .:||.|......|      |:|
Human   262 -------------------EKNSKKEKEKE---KTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRS 304

  Fly   783 QPRHINPFKRESVLSGRKSSSRPSSKER----------RFQRHDSEVENWDRDLELERNQLNGSQ 837
            :.|..:|.:|.|      ...|||.:.|          |.:|..|.|         .|.:.:.:.
Human   305 RSRSYSPRRRPS------PRRRPSPRRRTPPRRMPPPPRHRRSRSPV---------RRRRRSSAS 354

  Fly   838 LTGFQPRKSDEYTKFSIKKEKDLTPPPLQTNFTRTTIKIERNATPPRHMEHDVLVRNGAVATNAP 902
            |:|.....|...::...||      ||            :|.::|||        :...::.:|.
Human   355 LSGSSSSSSSSRSRSPPKK------PP------------KRTSSPPR--------KTRRLSPSAS 393

  Fly   903 PPAKEQESPDTDDYIDNWENDDSLASMPKNAPPVTPTPAPNANASLNATPLPPVASQFNGDDDDD 967
            ||.:...                                          |.||            
Human   394 PPRRRHR------------------------------------------PSPP------------ 404

  Fly   968 DSNALWNAKSTPPPRRKNENLPEGNIHELYDKFMNSIKMSNEHLEPETLDTSKNSSLSNSPAEES 1032
                     :||||:.::...|:               .||.         ::.|.:|.||...|
Human   405 ---------ATPPPKTRHSPTPQ---------------QSNR---------TRKSRVSVSPGRTS 436

  Fly  1033 SSGTETSSTSSSSSETEDDSSSDDDANESSSNDESATTSGNCNTNQDEAAGKEQLQKKNNVSKDL 1097
            ...|:...|....|.:........:.:||..:      .|......|....:.|.:::|..|.. 
Human   437 GKVTKHKGTEKRESPSPAPKPRKVELSESEED------KGGKMAAADSVQQRRQYRRQNQQSSS- 494

  Fly  1098 RKLKSLEDNLARIQMMRENYDAGDEISEELLKMESLFLMQRNAIMDKYRKQELKSNSSEDQQPVD 1162
                                |:|                              .|:||||::|  
Human   495 --------------------DSG------------------------------SSSSSEDERP-- 507

  Fly  1163 EQGTVQAQEVVKETSFPVNSIFSANREAIKLTISPLKLTRKSVIFDKDEADLPETSKAEPPKQTL 1227
            ::..|:..||.:.           .|.:...:.||....|:.           |||   |..|..
Human   508 KRSHVKNGEVGRR-----------RRHSPSRSASPSPRKRQK-----------ETS---PRMQMG 547

  Fly  1228 QKPQKEIAIVKPTIVESRSKPKLRSPPPSSGSRRRSRSRSISRSRARRRGSRTKSRTPS-PRRRR 1291
            ::.|..:         ::|..:.|||.|....||||.|.:....|.|......:.|||| |.|||
Human   548 KRWQSPV---------TKSGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRR 603

  Fly  1292 LPSPRRVSRYAKRIGGGAVGGTRKGRSHSRSLTRSRTRSRSPSRRRRLPPAGHRKRGSISPIPQK 1356
            .|||||                     :|..:.|..:.|..|.||...||...::|.|.||.|::
Human   604 SPSPRR---------------------YSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR 647

  Fly  1357 LAGPRSPPP--------SRRRQSL-SRDREREHLSRS----RSPLPFK--PPSPPMRRSWSKARS 1406
            ... .||||        .||..|| |:.|:....|||    |||.|.|  .|||..|...:.:..
Human   648 RVS-HSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSP 711

  Fly  1407 PTRRRSFSRSRSRSISPRSRLSAEEAFANYFEENQGMEAAAYYYNMSLMQQEDQNALGEGYDAYA 1471
            |..||..|.|..|..||..........:...|..:..:||:                        
Human   712 PPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAAS------------------------ 752

  Fly  1472 AYMDSAYNMEQAYAQYSEEYSNTYMDYMVEVASSPQAPGSVLRELPMAPMMPVESLAPIAPLEAM 1536
                   ...|:..:.|...|         |:.||: |.:   :.|.||..||:|.:|       
Human   753 -------PSPQSVRRVSSSRS---------VSGSPE-PAA---KKPPAPPSPVQSQSP------- 790

  Fly  1537 PSMAATASGMPVAVQKGNVLEIVPSGEDILEAEENIVPDATDKPVEDTSKPKGKGVNF-VDKVLP 1600
                :|.....|.|:|.......||           .|..:|:......|.|.|.... .||...
Human   791 ----STNWSPAVPVKKAKSPTPSPS-----------PPRNSDQEGGGKKKKKKKDKKHKKDKKHK 840

  Fly  1601 AYESDNEDRAVVEMAVKRALRKYHESRSQAAAKLQLIRDELLLLPPPPPPPLTTKPANLE 1660
            .::...:::||...|....     ...:.|||...|.::|.:..|.|.....:....||:
Human   841 KHKKHKKEKAVAAAAAAAV-----TPAAIAAATTTLAQEEPVAAPEPKKETESEAEDNLD 895

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)psg2NP_647974.1 PRP38_assoc 374..450 CDD:289628 5/15 (33%)
SRRM1NP_001353524.1 Necessary for mRNA 3'-end cleavage and cytoplasmic accumulation 1..156 39/161 (24%)
Necessary for DNA and RNA-binding 1..151 36/156 (23%)
PWI 46..115 CDD:396183 12/68 (18%)
PHA03307 <620..>754 CDD:223039 44/165 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
10.960

Return to query results.
Submit another query.