DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lkr and tacr3a

DIOPT Version :9

Sequence 1:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_001243567.1 Gene:tacr3a / 555482 ZFINID:ZDB-GENE-090312-106 Length:399 Species:Danio rerio


Alignment Length:390 Identity:119/390 - (30%)
Similarity:192/390 - (49%) Gaps:20/390 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 GAEEEAEFERLYAAPAEIVALLSIFYGGISIVAVIGNTLVIWVVATTRQMRTVTNMYIANLAFAD 81
            |:.....|...:..|...|||.|:.|..|..:||.||.:|:|::...::||||||.::.||||:|
Zfish     7 GSNLTGNFTNQFVQPPWRVALWSVAYSSILAIAVFGNLIVMWIILAHKRMRTVTNYFLLNLAFSD 71

  Fly    82 VIIGLFCIPFQFQAALLQSWNLPWFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRARPT 146
            ..:..|.....|..|....|......|.|..|....||..|:::::|||:||:.|||:||:.|.:
Zfish    72 ASMAAFNTLINFVYATHGDWYFGEAYCKFHNFFPVTSVFASIYSMSAIAVDRYMAIIHPLKPRLS 136

  Fly   147 KFVSKFIIGGIWMLALLFAVPFAIAFRVEELTERFRENNETYNVTRPFCMNKNLSDDQLQSFRYT 211
            ...:|.||..||:||::.|.|......:::|.:|          |..:......|:|   .|.|.
Zfish   137 ATATKVIIVCIWVLAVVLAFPLCFFSTIKKLPKR----------TLCYVAWPRPSED---PFMYH 188

  Fly   212 LV--FVQYLVPFCVISFVYIQMAVRLWGTRAPGNAQDSRDITLLKNKKKVIKMLIIVVIIFGLCW 274
            ::  .:.|::|..|:...|..:.:.|||...||::.|:.. ..|:.|:||:||:||||:.|..||
Zfish   189 IIVAMLVYVLPLVVMGINYTIVGLTLWGGEIPGDSSDNYQ-GQLRAKRKVVKMMIIVVVTFAFCW 252

  Fly   275 LPLQLYNILYVTIPEINDYHFISIVWFCCDWLAMSNSCYNPFIYGIYNEKFKREFNKRFAACFCK 339
            ||..:|.::.....::..:.||..::....|||||::.|||.||...|.:|:..|.:.|.  :|.
Zfish   253 LPYHVYFLVTGLNKQLARWKFIQQIYLSIMWLAMSSTMYNPIIYCCLNSRFRAGFKRVFR--WCP 315

  Fly   340 FKTSMDAHERTF-SMHTRASSIRSTYANSSMRIR-SNLFGPARGGVNNGKPGLHMPRVHGSGANS 402
            |....|..|... :|..:.:...|.|..|.|... ..:..|:......|:..|.....|.:|.::
Zfish   316 FVQVSDYDELELRAMRHKVARQSSMYTMSRMETTVVTVCDPSEPNTQPGRKSLLNHHHHHNGCSN 380

  Fly   403  402
            Zfish   381  380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LkrNP_647968.3 7tm_4 46..329 CDD:304433 94/284 (33%)
7tm_1 52..318 CDD:278431 88/267 (33%)
PHA03216 467..>519 CDD:177558
tacr3aNP_001243567.1 7tm_4 32..>168 CDD:304433 49/135 (36%)
7tm_1 42..296 CDD:278431 88/267 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4219
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X257
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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