DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lkr and NPY1R

DIOPT Version :9

Sequence 1:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster
Sequence 2:NP_000900.1 Gene:NPY1R / 4886 HGNCID:7956 Length:384 Species:Homo sapiens


Alignment Length:354 Identity:114/354 - (32%)
Similarity:186/354 - (52%) Gaps:48/354 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PAEIVALLSIFYGGISIVAVIGNTLVIWVVATTRQMRTVTNMYIANLAFADVIIGLFCIPFQFQA 95
            |..::..|::.||.:.|:.|.||..:|.::...::||.|||:.|.||:|:|:::.:.|:||.|..
Human    36 PLAMIFTLALAYGAVIILGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVY 100

  Fly    96 ALLQSWNLPWFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRARPTKFVSKFIIGGIWML 160
            .|:..|.....||...||||.:|:.||:|:|..||::||:.||||...||....:...|..||:|
Human   101 TLMDHWVFGEAMCKLNPFVQCVSITVSIFSLVLIAVERHQLIINPRGWRPNNRHAYVGIAVIWVL 165

  Fly   161 ALLFAVPFAIAFRVEELT-ERFRENNETYNVT------RPFCMNKNLSDDQLQSFRYTLVFVQYL 218
            |:..::||.|   .:.:| |.|:      |||      :..|.::..||....|:...|:.:||.
Human   166 AVASSLPFLI---YQVMTDEPFQ------NVTLDAYKDKYVCFDQFPSDSHRLSYTTLLLVLQYF 221

  Fly   219 VPFCVISFVYIQMAVRLWGTRAPGNAQDS-RDITLLKNK------KKVIKMLIIVVIIFGLCWLP 276
            .|.|.|...|.::.:||   :...|..|. ||     ||      |::..||:.:|:.|.:||||
Human   222 GPLCFIFICYFKIYIRL---KRRNNMMDKMRD-----NKYRSSETKRINIMLLSIVVAFAVCWLP 278

  Fly   277 LQLYNILYVTIPEINDY-HFI------SIVWFCCDWLAMSNSCYNPFIYGIYNEKFKREFNKRFA 334
            |.::|.::       |: |.|      ::::..|...||.::|.||..||..|:.|:|:.  :|.
Human   279 LTIFNTVF-------DWNHQIIATCNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDL--QFF 334

  Fly   335 ACFCKFKTSMDAHERTFSMHTRASSIRST 363
            ..||.|::..|.:| |.:|.|..:.:..|
Human   335 FNFCDFRSRDDDYE-TIAMSTMHTDVSKT 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LkrNP_647968.3 7tm_4 46..329 CDD:304433 100/303 (33%)
7tm_1 52..318 CDD:278431 93/286 (33%)
PHA03216 467..>519 CDD:177558
NPY1RNP_000900.1 7tm_4 52..>176 CDD:304433 50/126 (40%)
7tm_1 57..320 CDD:278431 93/286 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5959
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.860

Return to query results.
Submit another query.